Name: Aquimarina intermedia DSM 17527
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5593

Type strain:

Species: Aquimarina intermedia

Culture col. no.: DSM 17527, JCM 13506, LMG 23204, KMM 6258, BCRC 80195, KCTC 22830, NCIMB 14286

Strain history: KMM 6258 <-- O. I. Nedashkovskaya.

NCBI tax ID(s): 350814 (species)

SI-ID 138878

LMG 23204, DSM 17527, JCM 13506

Section

Aquimarina intermedia DSM 17527 is a mesophilic, Gram-negative bacterium that was isolated from sea urchin Strongylocentrotus intermedius.

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Aquimarina*
	Species	**Aquimarina intermedia**
	Full Scientific Name (LPSN)	Aquimarina intermedia Nedashkovskaya et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.993

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7043]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7043]

Culture medium growth

[Ref.: #7043]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7043]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7043]			growth	28 °C
[Ref.: #67770]			growth	25 °C

[Ref.: #7043]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7043]	Sample type/isolated from	sea urchin Strongylocentrotus intermedius
[Ref.: #7043]	Host species	Strongylocentrotus intermedius
[Ref.: #7043]	Geographic location (country and/or sea, region)	Sea of Japan, Peter the Great Gulf, Troitsa Bay
[Ref.: #7043]	Country	Russia
[Ref.: #7043]	Country ISO 3 Code	RUS
[Ref.: #7043]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Sea urchin Strongylocentrotus intermedius collected in Troitsa Bay
[Ref.: #67770]	Host species	Strongylocentrotus intermedius
[Ref.: #67770]	Geographic location (country and/or sea, region)	Gulf of Peter the Great
* marker position based on {}

Isolation sources categories

#Host	#Invertebrates (Other)	#Echinodermata
#Environmental	#Aquatic	#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM113977 (>99% sequence identity) for Aquimarina intermedia subclade from Microbeatlas

Aquatic Samples	1900
Soil Samples	31
Animal Samples	38
Plant Samples	17
Total Samples	1986

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7043]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7043]	Aquimarina intermedia 16S rRNA gene, type strain LMG 23204T	AM113977	1476	ENA	350814 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aquimarina intermedia DSM 17527	GCA_008124785	contig	GenBank	350814 tax ID
[Ref.: #66792]	Aquimarina intermedia strain DSM 17527	350814.3	wgs	PATRIC	350814 tax ID	*
[Ref.: #66792]	Aquimarina intermedia DSM 17527	2693429858	draft	JGI IMG/M	350814 tax ID	*

[Ref.: #7043]	GC-content	37.1 mol%
[Ref.: #67770]	GC-content	37.1 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aquimarina intermedia strain DSM 17527 PATRIC: 350814.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aquimarina intermedia strain DSM 17527 PATRIC: 350814.3
[Ref.: #69480]	gram-positive	no	97.76	no
[Ref.: #69480]	anaerobic	no	99.354	no
[Ref.: #69480]	halophile	yes	50.565	no
[Ref.: #69480]	spore-forming	no	93.889	no
[Ref.: #69480]	glucose-util	yes	76.547	no
[Ref.: #69480]	motile	no	87.25	no
[Ref.: #69480]	flagellated	no	93.389	no
[Ref.: #69480]	aerobic	yes	93.191	no
[Ref.: #69480]	thermophile	no	98.976	yes
[Ref.: #69480]	glucose-ferment	no	92.017	no

Availability in culture collections External links

[Ref.: #7043]

Culture collection no.

DSM 17527, JCM 13506, LMG 23204, KMM 6258, BCRC 80195, KCTC 22830, NCIMB 14286

[Ref.: #75075]

SI-ID 138878

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aquimarina penaei sp. nov., isolated from intestinal tract contents of Pacific white shrimp, Penaeus vannamei.	Li X, Wang L, Huang H, Lai Q, Shao Z	Antonie Van Leeuwenhoek	10.1007/s10482-014-0292-3	2014	*
Phylogeny	Aquimarina longa sp. nov., isolated from seawater, and emended description of Aquimarina muelleri.	Yu T, Yin Q, Song X, Zhao R, Shi X, Zhang XH	Int J Syst Evol Microbiol	10.1099/ijs.0.041509-0	2012	*
Phylogeny	Aquimarina litoralis sp. nov., isolated from a coastal seawater.	Oh YS, Kahng HY, Lee YS, Yoon BJ, Lim SB, Jung JS, Oh DC, Lee DH	J Microbiol	10.1007/s12275-010-0088-8	2010	*
Phylogeny	Aquimarina spongiae sp. nov., isolated from marine sponge Halichondria oshoro.	Yoon BJ, You HS, Lee DH, Oh DC	Int J Syst Evol Microbiol	10.1099/ijs.0.022046-0	2010	*
Phylogeny	Aquimarina intermedia sp. nov., reclassification of Stanierella latercula (Lewin 1969) as Aquimarina latercula comb. nov. and Gaetbulimicrobium brevivitae Yoon et al. 2006 as Aquimarina brevivitae comb. nov. and emended description of the genus Aquimarina.	Nedashkovskaya OI, Vancanneyt M, Christiaens L, Kalinovskaya NI, Mikhailov VV, Swings J	Int J Syst Evol Microbiol	10.1099/ijs.0.64155-0	2006	*

References

#7043

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17527

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75075

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID138878.1 )

* These data were automatically processed and therefore are not curated

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Aquimarina intermedia strain DSM 17527

Aquimarina intermedia strain DSM 17527

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