Name: Flavobacterium phragmitis BLN2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5583

Type strain:

Species: Flavobacterium phragmitis

Strain Designation: BLN2, BLN_2

Culture col. no.: DSM 23314, CGMCC 1.10370, CIP 110404

Strain history: CIP <- 2012, DSMZ <- Y. Li, College of Life Sci., Capital Normal Univ., Beijing, China: strain BLN2

NCBI tax ID(s): 739143 (species)

SI-ID 374280

DSM 23314, CGMCC 1.10370, CIP 110404

Section

Flavobacterium phragmitis BLN2 is a mesophilic, Gram-negative bacterium that was isolated from surface-sterilized, crushed roots of reed .

Gram-negative
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium phragmitis**
	Full Scientific Name (LPSN)	Flavobacterium phragmitis Liu et al. 2011

Information on morphological and physiological properties Morphology

[Ref.: #121812]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.973

[Ref.: #121812]	Cell shape	rod-shaped

[Ref.: #121812]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16785]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16785]

Culture medium growth

[Ref.: #16785]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16785]

Culture medium composition

expand / minimize

[Ref.: #34209]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #34209]

Culture medium growth

[Ref.: #34209]

Culture medium composition

expand / minimize

[Ref.: #121812]

Culture medium

CIP Medium 566

[Ref.: #121812]

Culture medium growth

[Ref.: #121812]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #16785]			growth	28 °C
[Ref.: #34209]			growth	30 °C

[Ref.: #16785]	Temperature range	mesophilic
[Ref.: #34209]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16785]	Sample type/isolated from	surface-sterilized, crushed roots of reed (Phragmites australis)
[Ref.: #16785]	Host species	Phragmites australis
[Ref.: #16785]	Geographic location (country and/or sea, region)	constructed Beijing Cuihu Wetland Park
[Ref.: #16785]	Country	China
[Ref.: #16785]	Country ISO 3 Code	CHN
[Ref.: #16785]	Continent	Asia

[Ref.: #121812]	Sample type/isolated from	Plant, Surface-sterilized, crushed roots of reed, Phragmites australis
[Ref.: #121812]	Geographic location (country and/or sea, region)	Cuihu Wetland Park , Beijing
[Ref.: #121812]	Country	China
[Ref.: #121812]	Country ISO 3 Code	CHN
[Ref.: #121812]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)
#Host Body-Site	#Plant	#Sterilized plant part

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16785]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121812]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16785]	Flavobacterium phragmitis strain BLN2 16S ribosomal RNA gene, partial sequence	GU564236	1475	ENA	739143 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium phragmitis CGMCC 1.10370	GCA_900112575	scaffold	GenBank	739143 tax ID	*
[Ref.: #66792]	Flavobacterium phragmitis strain CGMCC 1.10370	739143.3	wgs	PATRIC	739143 tax ID	*
[Ref.: #66792]	Flavobacterium phragmitis CGMCC 1.10370	2667527437	draft	JGI IMG/M	739143 tax ID	*

[Ref.: #16785]

GC-content

34.8 mol%

thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium phragmitis CGMCC 1.10370 NCBI: GCA_900112575.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium phragmitis CGMCC 1.10370 NCBI: GCA_900112575.1
[Ref.: #69480]	motile	no	79.591	no
[Ref.: #69480]	flagellated	no	94.066	no
[Ref.: #69480]	gram-positive	no	98.861	no
[Ref.: #69480]	anaerobic	no	99.418	no
[Ref.: #69480]	aerobic	yes	82.909	no
[Ref.: #69480]	halophile	no	97.42	no
[Ref.: #69480]	spore-forming	no	92.214	no
[Ref.: #69480]	glucose-ferment	no	88.803	no
[Ref.: #69480]	thermophile	no	99.608	yes
[Ref.: #69480]	glucose-util	yes	92.164	no

Availability in culture collections External links

[Ref.: #16785]

Culture collection no.

DSM 23314, CGMCC 1.10370, CIP 110404

[Ref.: #75065]

SI-ID 374280

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium phragmitis sp. nov., an endophyte of reed (Phragmites australis).	Liu M, Li YH, Liu Y, Zhu JN, Liu QF, Liu Y, Gu JG, Zhang XX, Li CL	Int J Syst Evol Microbiol	10.1099/ijs.0.027417-0	2010	*

References

#16785

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23314

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#34209 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75065

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID374280.1 )

#121812 Collection of Institut Pasteur ; Curators of the CIP; CIP 110404
* These data were automatically processed and therefore are not curated

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Flavobacterium phragmitis CGMCC 1.10370

Flavobacterium phragmitis CGMCC 1.10370

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