Name: Flavobacterium sasangense SS7
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5574

Type strain:

Species: Flavobacterium sasangense

Strain Designation: SS7, YC06274

Culture col. no.: DSM 21067, CIP 110183, KCTC 22246

Strain history: CIP <- 2017, DSMZ <- Y.R. Chung, GNU, Jinju, Korea: strain SS7 , YC06274 <- H.S. Yoon

NCBI tax ID(s): 1121896 (strain), 503361 (species)

Section

Flavobacterium sasangense SS7 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from wastewater polluted with heavy metals.

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	"Flavobacterium sasangense"
	Full Scientific Name (LPSN)	Flavobacterium sasangense Yoon et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29051]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #115967]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #29051]	Cell length	1.65 µm

[Ref.: #29051]	Cell width	0.4 µm

[Ref.: #29051]	Cell shape	rod-shaped
[Ref.: #115967]	Cell shape	rod-shaped

[Ref.: #29051]	Motility	yes
[Ref.: #115967]	Motility	no

[Ref.: #29051]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #15540]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #15540]

Culture medium growth

[Ref.: #15540]

Culture medium link

Medium recipe at MediaDive

[Ref.: #15540]

Culture medium composition

expand / minimize

[Ref.: #40556]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #40556]

Culture medium growth

[Ref.: #40556]

Culture medium composition

expand / minimize

[Ref.: #115967]

Culture medium

CIP Medium 566

[Ref.: #115967]

Culture medium growth

[Ref.: #115967]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #15540]	growth	28 °C
[Ref.: #29051]	growth	10-35 °C
[Ref.: #29051]	optimum	30 °C
[Ref.: #40556]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #15540]	Temperature range	mesophilic
[Ref.: #29051]	Temperature range	mesophilic
[Ref.: #40556]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29051]			optimum	7.75
[Ref.: #29051]			growth	6-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29051]	Oxygen tolerance	facultative anaerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #115967]	Oxygen tolerance	obligate aerobe

[Ref.: #29051]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29051]		NaCl		growth	0-1	%

[Ref.: #29051]	Observation	aggregates in clumps
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29051]	arabinose ChEBI	+	carbon source
[Ref.: #29051]	fructose ChEBI	+	carbon source
[Ref.: #29051]	galactose ChEBI	+	carbon source
[Ref.: #29051]	glucose ChEBI	+	carbon source
[Ref.: #29051]	lactose ChEBI	+	carbon source
[Ref.: #29051]	mannitol ChEBI	+	carbon source
[Ref.: #29051]	mannose ChEBI	+	carbon source
[Ref.: #29051]	melibiose ChEBI	+	carbon source
[Ref.: #115967]	nitrate ChEBI	-	reduction
[Ref.: #115967]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #115967]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #29051]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	-	3.1.3.2	* from API zym
[Ref.: #29051]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #29051]	catalase	+	1.11.1.6
[Ref.: #115967]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #29051]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #29051]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #115967]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #115967]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #115967]	12421	-	+	-	-	-	+	+	+	+	-	-	+	-	-	-	+	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #15540]	Sample type/isolated from	wastewater polluted with heavy metals
[Ref.: #15540]	Geographic location (country and/or sea, region)	Sasang stream near Busan
[Ref.: #15540]	Country	Republic of Korea
[Ref.: #15540]	Country ISO 3 Code	KOR
[Ref.: #15540]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From sasang stream near Busan
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #115967]	Sample type/isolated from	Environment, Wastewater Sasang stream polluted with heavy metals
[Ref.: #115967]	Geographic location (country and/or sea, region)	Busan
[Ref.: #115967]	Country	Republic of Korea
[Ref.: #115967]	Country ISO 3 Code	KOR
[Ref.: #115967]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Contamination	#Heavy metal
#Engineered	#Waste	#Wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU423319 (>99% sequence identity) for Flavobacterium from Microbeatlas

Aquatic Samples	7136
Soil Samples	481
Animal Samples	999
Plant Samples	192
Total Samples	8808

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #15540]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #115967]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #15540]	Flavobacterium sasangense strain YC6274 16S ribosomal RNA gene, partial sequence	EU423319	1343	ENA	503361 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium sasangense DSM 21067	GCA_000686885	scaffold	GenBank	1121896 tax ID	*
[Ref.: #66792]	Flavobacterium sasangense DSM 21067	1121896.3	wgs	PATRIC	1121896 tax ID	*
[Ref.: #66792]	Flavobacterium sasangense DSM 21067	2563366726	draft	JGI IMG/M	1121896 tax ID	*

[Ref.: #15540]	GC-content	32.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29051]	GC-content	32.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium sasangense DSM 21067 DSM 21067 NCBI: GCA_000686885.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium sasangense DSM 21067 DSM 21067 NCBI: GCA_000686885.1
[Ref.: #69480]	motile	no	86.172	yes
[Ref.: #69480]	flagellated	no	94.991	no
[Ref.: #69480]	gram-positive	no	98.921	yes
[Ref.: #69480]	anaerobic	no	97.934	yes
[Ref.: #69480]	halophile	no	93.997	no
[Ref.: #69480]	spore-forming	no	95.926	yes
[Ref.: #69480]	glucose-util	yes	83.348	no
[Ref.: #69480]	aerobic	yes	81.988	no
[Ref.: #69480]	thermophile	no	98.206	yes
[Ref.: #69480]	glucose-ferment	no	91.965	no

Availability in culture collections External links

[Ref.: #15540]

Culture collection no.

DSM 21067, CIP 110183, KCTC 22246

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium aquaticum sp. nov., isolated from a water sample of a rice field.	Subhash Y, Sasikala C, Ramana CV	Int J Syst Evol Microbiol	10.1099/ijs.0.050047-0	2013	*
Phylogeny	Flavobacterium sasangense sp. nov., isolated from a wastewater stream polluted with heavy metals.	Yoon HS, Aslam Z, Song GC, Kim SW, Jeon CO, Chon TS, Chung YR	Int J Syst Evol Microbiol	10.1099/ijs.0.004978-0	2009	*

References

#15540

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21067

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29051

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25481 (see below)

#40556 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#115967 Collection of Institut Pasteur ; Curators of the CIP; CIP 110183

#25481

IJSEM 1162 2009 ( DOI 10.1099/ijs.0.004978-0 , PubMed 19406812 )

* These data were automatically processed and therefore are not curated

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Flavobacterium sasangense DSM 21067 DSM 21067

Flavobacterium sasangense DSM 21067 DSM 21067

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