Name: Flavobacterium resistens BD-b365
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5573

Type strain:

Species: Flavobacterium resistens

Strain Designation: BD-b365

Culture col. no.: DSM 19382, CIP 109941, KCTC 22078, CCUG 59848

Strain history: CIP <- 2009, DSMZ <- C.O. Jeon, GSNU, Jinju, Korea: strain BD-b365

NCBI tax ID(s): 443612 (species)

SI-ID 359511

DSM 19382, KCTC 22078, CIP 109941, CCUG 59848

Section

Flavobacterium resistens BD-b365 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sediment of Hakjang stream.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium resistens**
	Full Scientific Name (LPSN)	Flavobacterium resistens Ryu et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32577]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #122162]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #32577]	Cell length	1.6-3.2 µm

[Ref.: #32577]	Cell width	0.4-0.6 µm

[Ref.: #32577]	Cell shape	rod-shaped
[Ref.: #122162]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #32577]	Motility	yes
[Ref.: #122162]	Motility	no
[Ref.: #67771]	Motility	yes

[Ref.: #32577]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #32577]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8083]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #8083]

Culture medium growth

[Ref.: #8083]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8083]

Culture medium composition

expand / minimize

[Ref.: #41933]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41933]

Culture medium growth

[Ref.: #41933]

Culture medium composition

expand / minimize

[Ref.: #122162]

Culture medium

CIP Medium 566

[Ref.: #122162]

Culture medium growth

[Ref.: #122162]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122162]

Culture medium

CIP Medium 72

[Ref.: #122162]

Culture medium growth

[Ref.: #122162]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8083]	growth	30 °C
[Ref.: #32577]	growth	15-40 °C
[Ref.: #32577]	optimum	20-30 °C
[Ref.: #41933]	growth	30 °C
[Ref.: #62131]	growth	30 °C
[Ref.: #67771]	growth	20-30 °C

[Ref.: #8083]	Temperature range	mesophilic
[Ref.: #41933]	Temperature range	mesophilic
[Ref.: #62131]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #32577]			optimum	07-08
[Ref.: #32577]			growth	6-9.5

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32577]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #122162]	Oxygen tolerance	facultative anaerobe

[Ref.: #32577]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.972

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32577]		NaCl		growth	0-2	%
[Ref.: #32577]		NaCl		optimum	0-0.5	%

[Ref.: #32577]	Observation	aggregates in chains
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32577]	esculin ChEBI	+	hydrolysis
[Ref.: #32577]	maltose ChEBI	+	carbon source
[Ref.: #122162]	nitrate ChEBI	+	reduction
[Ref.: #122162]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #122162]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32577]	catalase	+	1.11.1.6
[Ref.: #122162]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #32577]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122162]	oxidase	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122162]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122162]	12237	-	+	+	+	-	+	+	-	-	-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8083]	Sample type/isolated from	sediment of Hakjang stream
[Ref.: #8083]	Geographic location (country and/or sea, region)	Busan
[Ref.: #8083]	Country	Republic of Korea
[Ref.: #8083]	Country ISO 3 Code	KOR
[Ref.: #8083]	Continent	Asia

[Ref.: #62131]	Sample type/isolated from	Sediment
[Ref.: #62131]	Geographic location (country and/or sea, region)	Busan,Hakjang stream
[Ref.: #62131]	Country	Republic of Korea
[Ref.: #62131]	Country ISO 3 Code	KOR
[Ref.: #62131]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From contaminated soil(BTEX) sediment of the Hakjang stream in Busan
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #122162]	Sample type/isolated from	Environment, Sediment of Hakjang stream
[Ref.: #122162]	Geographic location (country and/or sea, region)	Busan
[Ref.: #122162]	Country	Republic of Korea
[Ref.: #122162]	Country ISO 3 Code	KOR
[Ref.: #122162]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8083]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122162]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8083]	Flavobacterium sp. BD-b365 16S ribosomal RNA gene, partial sequence	EF575563	1479	ENA	443612 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium resistens DSM 19382	GCA_900182645	contig	GenBank	443612 tax ID	*
[Ref.: #66792]	Flavobacterium resistens DSM 19382	GCA_009674815	contig	GenBank	443612 tax ID	*
[Ref.: #66792]	Flavobacterium resistens strain DSM 19382	443612.9	wgs	PATRIC	443612 tax ID	*
[Ref.: #66792]	Flavobacterium resistens strain DSM 19382	443612.6	wgs	PATRIC	443612 tax ID	*
[Ref.: #66792]	Flavobacterium resistens DSM 19382	2724679687	draft	JGI IMG/M	443612 tax ID	*

[Ref.: #8083]	GC-content	33.0 mol%	fluorimetric
[Ref.: #32577]	GC-content	35.4 mol%
[Ref.: #67771]	GC-content	35.44 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium resistens strain DSM 19382 PATRIC: 443612.6
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium resistens strain DSM 19382 PATRIC: 443612.9
[Ref.: #69480]	gram-positive	no	98.417	yes
[Ref.: #69480]	anaerobic	no	99.754	yes
[Ref.: #69480]	halophile	no	96.417	no
[Ref.: #69480]	spore-forming	no	94.03	yes
[Ref.: #69480]	glucose-util	yes	92.027	no
[Ref.: #69480]	aerobic	yes	90.846	no
[Ref.: #69480]	flagellated	no	94.838	no
[Ref.: #69480]	motile	no	84.699	no
[Ref.: #69480]	thermophile	no	99.53	no
[Ref.: #69480]	glucose-ferment	no	88.42	no

Availability in culture collections External links

[Ref.: #8083]

Culture collection no.

DSM 19382, CIP 109941, KCTC 22078, CCUG 59848

[Ref.: #75056]

SI-ID 359511

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium agrisoli sp. nov., a novel bacterium isolated from soil.	Li W, Ten LN, Kim MK, Lee SY, Jung HY	Arch Microbiol	10.1007/s00203-021-02376-6	2021	*
Phylogeny	Flavobacterium fluminis sp. nov. to accommodate an aerobic, halotolerant and gliding flavobacterium isolated from freshwater.	Ahn JH, Kim TW, Kim TS, Joung Y, Kim SB	Int J Syst Evol Microbiol	10.1099/ijsem.0.002135	2017	*
Phylogeny	Flavobacterium procerum sp. nov., isolated from freshwater.	Feng Q, Han L, Yuan X, Tan X, Gao Y, Lv J	Int J Syst Evol Microbiol	10.1099/ijs.0.000326	2015	*
Phylogeny	Flavobacterium fluvii sp. nov., isolated from stream sediment.	Lee SH, Kim JM, Lee JR, Park W, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.010850-0	2009	*
Phylogeny	Flavobacterium resistens sp. nov., isolated from stream sediment.	Ryu SH, Park JH, Moon JC, Sung Y, Lee SS, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.65720-0	2008	*

References

#8083

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19382

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32577

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28792 (see below)

#41933 ; Curators of the CIP;
#62131 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59848

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75056

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID359511.1 )

#122162 Collection of Institut Pasteur ; Curators of the CIP; CIP 109941

#28792

IJSEM 2266 2008 ( DOI 10.1099/ijs.0.65720-0 , PubMed 18842838 )

* These data were automatically processed and therefore are not curated

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Flavobacterium resistens strain DSM 19382

Flavobacterium resistens strain DSM 19382

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