Anoxybacteroides voinovskiense (DSM 17075, JCM 12111, NCIMB 13956)

Name: Anoxybacteroides voinovskiense (DSM 17075, JCM 12111, NCIMB 13956)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 557

Type strain

Strain Designation TH 13

Culture col. no. DSM 17075 JCM 12111 NCIMB 13956 TH 13

NCBI tax ID(s) 230470

Special Collections DSMZ JCM Literature strains

History DSMZ <- T. Itoh <- I. Yumoto JCM <-- I. Yumoto TH13.

Links

Anoxybacteroides voinovskiense TH 13 is a facultative aerobe, Gram-positive, rod-shaped bacterium that was isolated from hot spring.

Gram-positive rod-shaped facultative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 132773

JCM 12111,NCIMB 13956,DSM 17075

@ref 20215

Last LPSN update 2026-05-29 08:25:03

Domain Bacteria

Phylum Bacillota

Class Bacilli

Order Caryophanales

Family Bacillaceae

Genus Anoxybacteroides

Species Anoxybacteroides voinovskiense

Full scientific name Anoxybacteroides voinovskiense corrig. (Yumoto et al. 2004) Patel et al. 2024

Synonyms (2)

Anoxybacillus voinovskiensis
Anoxybacteroides voinovskiensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Motility
30055	positive	3.3 µm	0.5 µm	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
6742	MODIFIED TH AGAR (DSMZ Medium 1061)		Medium recipe at MediaDive	Name: MODIFIED TH AGAR (DSMZ Medium 1061) Composition: Tryptone 5.0 g/l NaCl 5.0 g/l Yeast extract 3.0 g/l MnSO4 x H2O 0.01 g/l H3BO3 0.0003 g/l CoCl2 x 6 H2O 0.0002 g/l ZnSO4 x 7 H2O 0.0001 g/l Na2MoO4 x 2 H2O 3e-05 g/l MnCl2 x 4 H2O 3e-05 g/l NiCl2 x 6 H2O 2e-05 g/l CuCl2 x 2 H2O 1e-05 g/l Agar Distilled water
6742	CASO AGAR (MERCK 105458) (DSMZ Medium 220)		Medium recipe at MediaDive	Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
6742	positive	growth	45
30055	positive	growth	54
30055	positive	optimum	30-64
67770	positive	growth	50

Culture pH

@ref	Ability	Type	PH
30055	positive	optimum	7.5
30055	positive	growth	7.0-8.0

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30055	facultative aerobe
125439	obligate aerobe	93.065

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30055	NaCl	positive	growth	0.0-3.0 %
30055	NaCl	positive	optimum	1.5 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30055	22599 ChEBI	arabinose	+	carbon source
30055	17057 ChEBI	cellobiose	+	carbon source
30055	28757 ChEBI	fructose	+	carbon source
30055	17234 ChEBI	glucose	+	carbon source
30055	17306 ChEBI	maltose	+	carbon source
30055	37684 ChEBI	mannose	+	carbon source
30055	17632 ChEBI	nitrate	+	reduction
30055	30911 ChEBI	sorbitol	+	carbon source
30055	17992 ChEBI	sucrose	+	carbon source
30055	53423 ChEBI	tween 40	+	carbon source
30055	53425 ChEBI	tween 60	+	carbon source
30055	18222 ChEBI	xylose	+	carbon source

Enzymes

@ref	Value	Activity	Ec
30055	catalase	+	1.11.1.6
30055	cytochrome oxidase	+	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Thermal spring
#Condition	#Thermophilic (>45°C)	-

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6742	hot spring	Kamtchatka	Russia	RUS	Asia
67770	Water sample from the Voinovskie Hot Springs in Kamchatka		Russia	RUS

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6742	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1419620v1 assembly for Anoxybacteroides voinovskiense DSM 17075	scaffold	GCA_014196205	230470.4	2829825107	230470	63.22
66792	ASM1464661v1 assembly for Anoxybacteroides voinovskiense JCM 12111	contig	GCA_014646615	230470.5		230470	56.6

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6742	Anoxybacillus voinovskiensis gene for 16S ribosomal RNA, partial sequence	AB110008	1506		230470
124043	Anoxybacillus voinovskiensis strain JCM 12111 16S ribosomal RNA gene, partial sequence.	MT760344	1383		230470

GC content

@ref	GC-content (mol%)	Method
6742	43.9
67770	43.9	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1419620v1 assembly for Anoxybacteroides voinovskiense DSM 17075
BV-BRC: 230470.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.07	no
125439	gram_stain	BacteriaNetⓘ	variable	72.62	no
125439	motility	BacteriaNetⓘ	yes	70.96	no
125439	spore_formation	BacteriaNetⓘ	yes	68.48	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Anoxybacillus voinovskiensis DSM 17075
NCBI: GCA_014196205.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	75.72	yes
125438	anaerobic	anaerobicⓘ	no	78.29	no
125438	aerobic	aerobicⓘ	no	55.50	yes
125438	spore-forming	spore-formingⓘ	yes	89.88	no
125438	thermophilic	thermophileⓘ	yes	63.16	yes
125438	flagellated	motile2+ⓘ	yes	79.45	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Anoxybacillus calidus sp. nov., a thermophilic bacterium isolated from soil near a thermal power plant.	Cihan AC, Cokmus C, Koc M, Ozcan B	Int J Syst Evol Microbiol	10.1099/ijs.0.056549-0	2013
Phylogeny	Anoxybacillus voinovskiensis sp. nov., a moderately thermophilic bacterium from a hot spring in Kamchatka.	Yumoto I, Hirota K, Kawahara T, Nodasaka Y, Okuyama H, Matsuyama H, Yokota Y, Nakajima K, Hoshino T	Int J Syst Evol Microbiol	10.1099/ijs.0.02889-0	2004

References

#6742	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17075
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26416	IJSEM 1239 2004 ( DOI 10.1099/ijs.0.02889-0 , PubMed 15280298 )
#30055	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26416
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Anoxybacteroides voinovskiense (DSM 17075, JCM 12111, NCIMB 13956)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Halophily

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014196205

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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