Flavobacterium glaciei (DSM 19728, CGMCC 1.5380, JCM 13953)

Name: Flavobacterium glaciei (DSM 19728, CGMCC 1.5380, JCM 13953)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5566

Type strain

Strain Designation 0499, 499

Culture col. no. DSM 19728 CGMCC 1.5380 JCM 13953 CCUG 60844 CIP 109489 3 more

NCBI tax ID(s) 386300

Special Collections DSMZ CCUG JCM CIP

History <- JCM/RIKEN <- D. Zhang and P. Zhou, Chinese Acad. Sci. (CAS), Beijing; 0499 D.-C. Zhang and P.-J. Zhou 0499. CIP <- 2007, JCM <- 2006, D. Zhang and P. Zhou, Chinese Acad. Sci., Beijing, China: strain 0499

Links

Flavobacterium glaciei 0499 is an obligate aerobe, Gram-negative, rod-shaped bacterium that was isolated from frozen soil from the China No.1 glacier.

Gram-negative rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 376998

CGMCC 1.5380,JCM 13953,DSM 19728,CIP 109489,LMG 25320

@ref 20215

Last LPSN update 2026-02-09 11:18:59

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium glaciei

Full scientific name Flavobacterium glaciei Zhang et al. 2006

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119633	negative	rod-shaped
125438			92.595
125438	negative		99.5
125439	negative		99.9

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
8267	PYG MEDIUM (E) (DSMZ Medium 1140)	Medium recipe at MediaDive	Name: PYG MEDIUM (E) (DSMZ Medium 1140) Composition: Agar 15.0 g/l Glucose 5.0 g/l Bacto peptone 5.0 g/l Beef extract 3.0 g/l MgSO4 x 7 H2O 1.5 g/l NaCl 0.5 g/l Yeast extract 0.2 g/l Distilled water
37571	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119633	CIP Medium 72	Medium recipe at CIP
119633	CIP Medium 691	Medium recipe at CIP
8267	R2A MEDIUM (DSMZ Medium 830)	Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8267	positive	growth	21
8267	positive	growth	20
37571	positive	growth	20
67770	positive	growth	21

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
119633	obligate aerobe
125439	obligate aerobe	99

Spore formation

@ref	Spore formation	Confidence
125438		93.31
125439		99.4

Observation

67770

Observationquinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
119633	17632 ChEBI	nitrate	-	reduction
119633	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119633	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119633	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119633	oxidase	+
68382	trypsin	+	3.4.21.4	from API zym
119633	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119633	-	+	+	+	-	+	+	+	+	-	+	+	-	+	-	+	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Glacier
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent
8267	frozen soil from the China No.1 glacier		north-west China, Xinjiang Uygur Autonomous Region	China	CHN	Asia
62463	Glacier	2006	No.1 glacier,Xinjiang Uygur Region	China	CHN	Asia
67770	China No.1 glacier in the Xinjiang Uygur Autonomous Region
119633	China N°1 glacier			China	CHN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8267	1	Risk group (German classification) According to TRBA 466
119633	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM335054v1 assembly for Flavobacterium glaciei DSM 19728	scaffold	GCA_003350545	386300.4	2770939517	386300	70.78
66792	ASM799415v1 assembly for Flavobacterium glaciei CGMCC 1.5380	scaffold	GCA_007994155	386300.6	2596583583	386300	69.71

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8267	Flavobacterium glaciei strain 0499 16S ribosomal RNA gene, partial sequence	DQ515962	1424		386300

GC content

@ref	GC-content (mol%)	Method
8267	36.5
67770	36.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Flavobacterium glaciei DSM 19728
NCBI: GCA_003350545

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	no	65.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Flavobacterium glaciei DSM 19728
NCBI: GCA_003350545.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.50	no
125438	anaerobic	anaerobicⓘ	no	97.91	no
125438	aerobic	aerobicⓘ	yes	89.19	yes
125438	spore-forming	spore-formingⓘ	no	93.31	no
125438	thermophilic	thermophileⓘ	no	97.45	yes
125438	flagellated	motile2+ⓘ	no	92.60	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Identification of Flavobacterium algoritolerans sp. nov. and Flavobacterium yafengii sp. nov., two novel members of the genus Flavobacterium.	Yin CC, Yang LL, Xin YH, Ye J, Liu Q.	Int J Syst Evol Microbiol	10.1099/ijsem.0.006072	2023
Phylogeny	Flavobacterium ranwuense sp. nov., isolated from glacier.	Zhang GQ, Liu Q, Liu HC, Zhou YG, Xin YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003687	2019
Phylogeny	Flavobacterium terriphilum sp. nov., isolated from soil.	Zhang G, Xian W, Chu Q, Yang J, Liu W, Yang L, Xiao M, Jiang H, Li W	Int J Syst Evol Microbiol	10.1099/ijsem.0.001347	2016
Phylogeny	Flavobacterium chungbukense sp. nov., isolated from soil.	Lim CS, Oh YS, Lee JK, Park AR, Yoo JS, Rhee SK, Roh DH	Int J Syst Evol Microbiol	10.1099/ijs.0.028563-0	2010
Phylogeny	Flavobacterium glaciei sp. nov., a novel psychrophilic bacterium isolated from the China No.1 glacier.	Zhang DC, Wang HX, Liu HC, Dong XZ, Zhou PJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64564-0	2006

References

#8267	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19728
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#37571	; Curators of the CIP;
#62463	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60844
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#119633	Collection of Institut Pasteur ; Curators of the CIP; CIP 109489
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium glaciei (DSM 19728, CGMCC 1.5380, JCM 13953)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003350545

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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