Name: Flavobacterium glaciei 0499
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5566

Type strain:

Species: Flavobacterium glaciei

Strain Designation: 0499, 499

Culture col. no.: DSM 19728, CGMCC 1.5380, JCM 13953, CCUG 60844, CIP 109489, BCRC 81081

Strain history: CIP <- 2007, JCM <- 2006, D. Zhang and P. Zhou, Chinese Acad. Sci., Beijing, China: strain 0499

NCBI tax ID(s): 386300 (species)

SI-ID 376998

CGMCC 1.5380, JCM 13953, DSM 19728, CIP 109489, LMG 25320

Special Collections

Section

Flavobacterium glaciei 0499 is an obligate aerobe, Gram-negative, rod-shaped bacterium that was isolated from frozen soil from the China No.1 glacier.

Gram-negative
rod-shaped
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium glaciei**
	Full Scientific Name (LPSN)	Flavobacterium glaciei Zhang et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #119633]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.5

[Ref.: #119633]	Cell shape	rod-shaped

[Ref.: #119633]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %92.595

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8267]

Culture medium

PYG MEDIUM (E) (DSMZ Medium 1140)

[Ref.: #8267]

Culture medium growth

[Ref.: #8267]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8267]

Culture medium composition

expand / minimize

[Ref.: #37571]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37571]

Culture medium growth

[Ref.: #37571]

Culture medium composition

expand / minimize

[Ref.: #119633]

Culture medium

CIP Medium 72

[Ref.: #119633]

Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

[Ref.: #119633]

Culture medium

CIP Medium 691

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Culture medium growth

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Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #8267]	growth	21 °C
[Ref.: #37571]	growth	20 °C
[Ref.: #67770]	growth	21 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #119633]

Oxygen tolerance

obligate aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %93.31
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #119633]		nitrate ChEBI	-	reduction
[Ref.: #119633]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #119633]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119633]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119633]	oxidase	+
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #119633]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #119633]	11901	-	+	+	+	-	+	+	+	+	-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8267]	Sample type/isolated from	frozen soil from the China No.1 glacier
[Ref.: #8267]	Geographic location (country and/or sea, region)	north-west China, Xinjiang Uygur Autonomous Region
[Ref.: #8267]	Country	China
[Ref.: #8267]	Country ISO 3 Code	CHN
[Ref.: #8267]	Continent	Asia

[Ref.: #62463]	Sample type/isolated from	Glacier
[Ref.: #62463]	Sampling date	2006
[Ref.: #62463]	Geographic location (country and/or sea, region)	No.1 glacier,Xinjiang Uygur Region
[Ref.: #62463]	Country	China
[Ref.: #62463]	Country ISO 3 Code	CHN
[Ref.: #62463]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	China No.1 glacier in the Xinjiang Uygur Autonomous Region

[Ref.: #119633]	Sample type/isolated from	China N°1 glacier
[Ref.: #119633]	Country	China
[Ref.: #119633]	Country ISO 3 Code	CHN
[Ref.: #119633]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Glacier
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8267]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119633]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8267]	Flavobacterium glaciei strain 0499 16S ribosomal RNA gene, partial sequence	DQ515962	1424	GenBank ENA	386300 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium glaciei DSM 19728	GCA_003350545	scaffold	GenBank ENA	386300 tax ID	*
[Ref.: #66792]	Flavobacterium glaciei CGMCC 1.5380	GCA_007994155	scaffold	GenBank ENA	386300 tax ID	*
[Ref.: #66792]	Flavobacterium glaciei strain CGMCC 1.5380	386300.6	wgs	PATRIC	386300 tax ID	*
[Ref.: #66792]	Flavobacterium glaciei strain DSM 19728	386300.4	wgs	PATRIC	386300 tax ID	*
[Ref.: #66792]	Flavobacterium glaciei DSM 19728	2770939517	draft	JGI IMG/M	386300 tax ID	*
[Ref.: #66792]	Flavobacterium glaciei CGMCC 1.5380	2596583583	draft	JGI IMG/M	386300 tax ID	*

[Ref.: #8267]	GC-content	36.5 mol%
[Ref.: #67770]	GC-content	36.5 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium glaciei DSM 19728 NCBI: GCA_003350545.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium glaciei DSM 19728 NCBI: GCA_003350545.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.911	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.19	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.31	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.448	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	92.595	no

Availability in culture collections External links

[Ref.: #8267]

Culture collection no.

DSM 19728, CGMCC 1.5380, JCM 13953, CCUG 60844, CIP 109489, BCRC 81081

[Ref.: #75048]	SI-ID 376998	*
[Ref.: #75049]	SI-ID 411903	*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium ranwuense sp. nov., isolated from glacier.	Zhang GQ, Liu Q, Liu HC, Zhou YG, Xin YH	Int J Syst Evol Microbiol	10.1099/ijsem.0.003687	2019	*
Phylogeny	Flavobacterium terriphilum sp. nov., isolated from soil.	Zhang G, Xian W, Chu Q, Yang J, Liu W, Yang L, Xiao M, Jiang H, Li W	Int J Syst Evol Microbiol	10.1099/ijsem.0.001347	2016	*
Phylogeny	Flavobacterium chungbukense sp. nov., isolated from soil.	Lim CS, Oh YS, Lee JK, Park AR, Yoo JS, Rhee SK, Roh DH	Int J Syst Evol Microbiol	10.1099/ijs.0.028563-0	2010	*
Phylogeny	Flavobacterium glaciei sp. nov., a novel psychrophilic bacterium isolated from the China No.1 glacier.	Zhang DC, Wang HX, Liu HC, Dong XZ, Zhou PJ	Int J Syst Evol Microbiol	10.1099/ijs.0.64564-0	2006	*

References

#8267

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19728

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#37571 ; Curators of the CIP;
#62463 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60844

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75048

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID376998.1 )

#75049

#119633 Collection of Institut Pasteur ; Curators of the CIP; CIP 109489
* These data were automatically processed and therefore are not curated

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Flavobacterium glaciei DSM 19728

Flavobacterium glaciei DSM 19728

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