Name: Flavobacterium aquidurense WB1.1-56
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5550

Type strain:

Species: Flavobacterium aquidurense

Strain Designation: WB1.1-56

Culture col. no.: DSM 18293, CCUG 59847, CIP 109242, KCTC 22840, WB 1.1-56

Strain history: <- CIP <- 2006, DSM <- O P?uker, strain WB 1.1-56

NCBI tax ID(s): 362413 (species)

Section

Flavobacterium aquidurense WB1.1-56 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from stream water.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium aquidurense**
	Full Scientific Name (LPSN)	Flavobacterium aquidurense Cousin et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31865]	Gram stain	negative
[Ref.: #31865]	Cell length	2.8 µm
[Ref.: #31865]	Cell width	0.9 µm
[Ref.: #31865]	Cell shape	rod-shaped
[Ref.: #31865]	Motility	no

[Ref.: #67771]	Gram stain	negative

[Ref.: #69480]	Gram stain	negative Confidence in %99.993

[Ref.: #31865]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7489]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7489]

Culture medium growth

[Ref.: #7489]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7489]

Culture medium composition

expand / minimize

[Ref.: #36274]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36274]

Culture medium growth

[Ref.: #36274]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7489]	growth	25 °C
[Ref.: #31865]	growth	13-30 °C
[Ref.: #31865]	optimum	23.5 °C
[Ref.: #36274]	growth	25 °C
[Ref.: #62130]	growth	30 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #7489]	Temperature range	mesophilic
[Ref.: #31865]	Temperature range	psychrophilic
[Ref.: #36274]	Temperature range	mesophilic
[Ref.: #62130]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31865]			optimum	6.4
[Ref.: #31865]			growth	6.0-6.6

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31865]	Oxygen tolerance	aerobe
[Ref.: #62130]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31865]		NaCl		growth	0-1	%
[Ref.: #31865]		NaCl		optimum	0.5	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31865]	alpha-cyclodextrin ChEBI	+	carbon source
[Ref.: #31865]	asparagine ChEBI	+	carbon source
[Ref.: #31865]	aspartate ChEBI	+	carbon source
[Ref.: #31865]	esculin ChEBI	+	hydrolysis
[Ref.: #31865]	fructose ChEBI	+	carbon source
[Ref.: #31865]	ornithine ChEBI	+	carbon source
[Ref.: #31865]	threonine ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #31865]	acid phosphatase	+	3.1.3.2
[Ref.: #31865]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31865]	catalase	+	1.11.1.6
[Ref.: #31865]	cytochrome oxidase	+	1.9.3.1

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #62130]

Fatty acid	Percentage	ECL
C15:0 ISO	27.6	14.621
C15:0	9.3	15
C15:1 ω6c	8.8	14.856
C15:0 ISO 3OH	8.2	16.135
C17:0 iso 3OH	7.2	18.161
C16:1 ω7c	6.7	15.819
C17:1 ω9c ISO	6.4	16.416
unknown 13.566	4.3	13.566
C17:1 ISO I/C16:0 DMA	3.7	16.481
C17:1 ω6c	3.4	16.862
unknown 11.541	1.8	11.541
C16:0	1.8	16
C16:0 iso 3OH	1.6	17.145
C15:0 ANTEISO	1.6	14.711
C15:1 ISO G	1.3	14.441
unknown 12.555	1.2	12.555
C13:0 3OH/C15:1 i I/H	1.1	14.469
C16:0 3OH	1	17.52
C18:2 ω6,9c/C18:0 ANTE	0.8	17.724
C17:1 ω8c	0.6	16.792
C16:0 iso	0.6	15.626
C12:1 at 11-12	0.6	11.925
C13:1 at 12-13	0.5	12.931
C16:1 ISO H	0.3	15.461

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7489]	Sample type/isolated from	stream water
[Ref.: #7489]	Geographic location (country and/or sea, region)	Lower Saxony, Westhöfer Bach
[Ref.: #7489]	Country	Germany
[Ref.: #7489]	Country ISO 3 Code	DEU
[Ref.: #7489]	Continent	Europe

[Ref.: #62130]	Sample type/isolated from	Stream water
[Ref.: #62130]	Sampling date	2005
[Ref.: #62130]	Geographic location (country and/or sea, region)	Lower Saxony,Westhöfer Bach
[Ref.: #62130]	Country	Germany
[Ref.: #62130]	Country ISO 3 Code	DEU
[Ref.: #62130]	Continent	Europe

[Ref.: #67771]	Sample type/isolated from	From hard water creek
[Ref.: #67771]	Country	Germany
[Ref.: #67771]	Country ISO 3 Code	DEU
[Ref.: #67771]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7489]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7489]	Flavobacterium aquidurense 16S rRNA gene, type strain WB 1.1-56	AM177392	1494	ENA	362413 tax ID
[Ref.: #20218]	Flavobacterium aquidurense strain DSM 18293 16S ribosomal RNA gene, partial sequence	JX657043	1256	ENA	362413 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium aquidurense DSM 18293	GCA_002217195	scaffold	GenBank	362413 tax ID	*
[Ref.: #66792]	Flavobacterium aquidurense DSM 18293	GCA_900107365	scaffold	GenBank	362413 tax ID	*
[Ref.: #66792]	Flavobacterium aquidurense strain DSM 18293	362413.7	wgs	PATRIC	362413 tax ID	*
[Ref.: #66792]	Flavobacterium aquidurense strain DSM 18293	362413.16	wgs	PATRIC	362413 tax ID	*
[Ref.: #66792]	Flavobacterium aquidurense DSM 18293	2693429908	draft	JGI IMG/M	362413 tax ID	*

[Ref.: #31865]

GC-content

33.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium aquidurense DSM 18293 NCBI: GCA_002217195.1
[Ref.: #69480]	spore-forming	no	99.995	yes
[Ref.: #69480]	gram-positive	no	99.993	yes
[Ref.: #69480]	anaerobic	no	99.717	yes
[Ref.: #69480]	thermophile	no	99.989	no
[Ref.: #69480]	motile	no	82.5	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium aquidurense DSM 18293 NCBI: GCA_002217195.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #7489]

Culture collection no.

DSM 18293, CCUG 59847, CIP 109242, KCTC 22840, WB 1.1-56

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium circumlabens sp. nov. and Flavobacterium cupreum sp. nov., two psychrotrophic species isolated from Antarctic environmental samples.	Kralova S, Busse HJ, Svec P, Maslanova I, Stankova E, Bartak M, Sedlacek I	Syst Appl Microbiol	10.1016/j.syapm.2018.12.005	2018	*
Phylogeny	Flavobacterium chryseum sp. nov. and Flavobacterium psychroterrae sp. nov., novel environmental bacteria isolated from Antarctica.	Kralova S, Svec P, Busse HJ, Stankova E, Vaczi P, Sedlacek I	Int J Syst Evol Microbiol	10.1099/ijsem.0.002952	2018	*
Phylogeny	Flavobacterium spartansii sp. nov., a pathogen of fishes, and emended descriptions of Flavobacterium aquidurense and Flavobacterium araucananum.	Loch TP, Faisal M	Int J Syst Evol Microbiol	10.1099/ijs.0.051433-0	2013	*
Phylogeny	Flavobacterium resistens sp. nov., isolated from stream sediment.	Ryu SH, Park JH, Moon JC, Sung Y, Lee SS, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.65720-0	2008	*
Phylogeny	Flavobacterium aquidurense sp. nov. and Flavobacterium hercynium sp. nov., from a hard-water creek.	Cousin S, Pauker O, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64556-0	2007	*

References

#7489

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18293

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31865

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28125 (see below)

#36274 ; Curators of the CIP;
#62130 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 59847

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#28125

IJSEM 243 2007 ( DOI 10.1099/ijs.0.64556-0 , PubMed 17267958 )

* These data were automatically processed and therefore are not curated

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Flavobacterium aquidurense DSM 18293

Flavobacterium aquidurense DSM 18293

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