Name: Flavobacterium terrigena DS-20
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5549

Type strain:

Species: Flavobacterium terrigena

Strain Designation: DS-20

Culture col. no.: DSM 17934, CIP 109939, KCTC 12761

Strain history: <- JH Yoon, KRIBB

NCBI tax ID(s): 402734 (species)

Section

Flavobacterium terrigena DS-20 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from soil.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium terrigena**
	Full Scientific Name (PNU)	Flavobacterium terrigena Yoon et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #31993]	Gram stain	negative
[Ref.: #31993]	Cell length	1.6 µm
[Ref.: #31993]	Cell width	0.45 µm
[Ref.: #31993]	Cell shape	rod-shaped
[Ref.: #31993]	Motility	no

[Ref.: #67771]	Gram stain	negative

[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #67771]	Cell shape	rod-shaped
[Ref.: #67771]	Motility	no

[Ref.: #31993]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7175]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #7175]

Culture medium growth

[Ref.: #7175]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #7175]

Culture medium composition

expand / minimize

[Ref.: #33340]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33340]

Culture medium growth

[Ref.: #33340]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7175]	growth	25 °C
[Ref.: #31993]	growth	10-30 °C
[Ref.: #31993]	optimum	25 °C
[Ref.: #33340]	growth	30 °C
[Ref.: #67771]	growth	25 °C

[Ref.: #7175]	Temperature range	mesophilic
[Ref.: #31993]	Temperature range	mesophilic
[Ref.: #33340]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31993]			optimum	6.75
[Ref.: #31993]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31993]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.999

[Ref.: #67771]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31993]	2-oxopentanoate ChEBI	+	carbon source
[Ref.: #31993]	gelatin ChEBI	+	carbon source
[Ref.: #31993]	glutamate ChEBI	+	carbon source
[Ref.: #31993]	methyl pyruvate ChEBI	+	carbon source
[Ref.: #31993]	ornithine ChEBI	+	carbon source
[Ref.: #31993]	proline ChEBI	+	carbon source
[Ref.: #31993]	serine ChEBI	+	carbon source
[Ref.: #31993]	succinate ChEBI	+	carbon source
[Ref.: #31993]	threonine ChEBI	+	carbon source
[Ref.: #31993]	tween 20 ChEBI	+	carbon source
[Ref.: #31993]	tween 40 ChEBI	+	carbon source
[Ref.: #31993]	tween 60 ChEBI	+	carbon source
[Ref.: #31993]	tween 80 ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #31993]	alkaline phosphatase	+	3.1.3.1
[Ref.: #31993]	catalase	+	1.11.1.6
[Ref.: #31993]	cytochrome oxidase	+	1.9.3.1
[Ref.: #31993]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7175]	Sample type/isolated from	soil
[Ref.: #7175]	Geographic location (country and/or sea, region)	Dokdo
[Ref.: #7175]	Country	Republic of Korea
[Ref.: #7175]	Country ISO 3 Code	KOR
[Ref.: #7175]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Dokdo
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ889724 (>99% sequence identity) for Flavobacterium terrigena subclade from Microbeatlas

Aquatic Samples	1062
Soil Samples	62
Animal Samples	183
Plant Samples	119
Total Samples	1426

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7175]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7175]	Flavobacterium terrigena strain DS-20 16S ribosomal RNA gene, partial sequence	DQ889724	1470	ENA	402734 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium terrigena DSM 17934	GCA_900108955	scaffold	GenBank	402734 tax ID	*
[Ref.: #66792]	Flavobacterium terrigena strain DSM 17934	402734.4	wgs	PATRIC	402734 tax ID	*
[Ref.: #66792]	Flavobacterium terrigena DSM 17934	2600255390	draft	JGI IMG/M	402734 tax ID	*

[Ref.: #7175]	GC-content	38.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #31993]	GC-content	38.2 mol%
[Ref.: #7175]	GC-content	31.2 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium terrigena DSM 17934 NCBI: GCA_900108955.1
[Ref.: #69480]	spore-forming	no	99.999	no
[Ref.: #69480]	anaerobic	no	98.677	no
[Ref.: #69480]	gram-positive	no	99.998	yes
[Ref.: #69480]	thermophile	no	99.814	yes
[Ref.: #69480]	motile	no	88.502	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium terrigena DSM 17934 NCBI: GCA_900108955.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #7175]

Culture collection no.

DSM 17934, CIP 109939, KCTC 12761

[Ref.: #20218]

Associated Passport(s) in StrainInfo

718929, 900969, 718930

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium difficile sp. nov., isolated from a freshwater waterfall.	Chen WM, You YX, Young CC, Lin SY, Sheu SY	Arch Microbiol	10.1007/s00203-021-02440-1	2021	*
Phylogeny	Flavobacterium macrobrachii sp. nov., isolated from a freshwater shrimp culture pond.	Sheu SY, Chiu TF, Young CC, Arun AB, Chen WM	Int J Syst Evol Microbiol	10.1099/ijs.0.025403-0	2010	*
Phylogeny	Flavobacterium terrigena sp. nov., isolated from soil.	Yoon JH, Kang SJ, Lee JS, Oh TK	Int J Syst Evol Microbiol	10.1099/ijs.0.64776-0	2007	*

References

#7175

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17934

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#31993

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28247 (see below)

#33340 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#28247

IJSEM 947 2007 ( DOI 10.1099/ijs.0.64776-0 , PubMed 17473238 )

* These data were automatically processed and therefore are not curated

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Flavobacterium terrigena DSM 17934

Flavobacterium terrigena DSM 17934

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