Flavobacterium suncheonense GH 29-5, GH29-5 | Type strain | DSM 17707, CIP 109901, KACC 11423 | BacDiveID:5545

Strain identifier

BacDive ID: 5545

Type strain:

Species: Flavobacterium suncheonense

Strain Designation: GH 29-5, GH29-5

Culture col. no.: DSM 17707, CIP 109901, KACC 11423

Strain history: CIP <- 2008, DSMZ <- KACC <- B.Y. Kim, RDA, Suwon, Korea: strain GH29-5

NCBI tax ID(s): 1121899 (strain), 350894 (species)

SI-ID 297213

DSM 17707, KACC 11423, CIP 109901, LMG 25507

Section

Flavobacterium suncheonense GH 29-5 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from greenhouse soil.

Gram-negative
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium suncheonense**
	Full Scientific Name (LPSN)	Flavobacterium suncheonense Kim et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #31773]	Gram stain	negative
[Ref.: #123387]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.999

[Ref.: #31773]	Cell length	1.5-2.5 µm

[Ref.: #31773]	Cell width	0.3 µm

[Ref.: #31773]	Cell shape	rod-shaped
[Ref.: #123387]	Cell shape	rod-shaped

[Ref.: #31773]	Motility	no
[Ref.: #123387]	Motility	no

Pigment production

yes

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

R2A MEDIUM (DSMZ Medium 830)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

Culture medium growth

Culture medium composition

expand / minimize

[Ref.: #123387]

Culture medium

CIP Medium 566

[Ref.: #123387]

Culture medium growth

[Ref.: #123387]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #7150]			growth	28 °C
[Ref.: #31773]			growth	15-37 °C
[Ref.: #31773]			optimum	30-37 °C
[Ref.: #42251]			growth	30 °C

[Ref.: #7150]	Temperature range	mesophilic
[Ref.: #31773]	Temperature range	mesophilic
[Ref.: #42251]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31773]			optimum	7
[Ref.: #31773]			growth	06-08

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31773]	Oxygen tolerance	aerobe
[Ref.: #123387]	Oxygen tolerance	obligate aerobe

[Ref.: #31773]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.998

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31773]		NaCl		growth	0-1	%
[Ref.: #31773]		NaCl		optimum	0-1	%

Observation

aggregates in chains

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #123387]		nitrate ChEBI	-	reduction
[Ref.: #123387]		nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #123387]		indole ChEBI	no

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #68382]		acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #68382]		alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]		alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]		alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]		alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]		alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]		alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]		beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]		beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]		beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31773]		catalase	+	1.11.1.6
[Ref.: #123387]		catalase	+	1.11.1.6
[Ref.: #68382]		cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #31773]		cytochrome oxidase	+	1.9.3.1
[Ref.: #68382]		esterase (C 4)	+		* from API zym
[Ref.: #68382]		esterase lipase (C 8)	+		* from API zym
[Ref.: #31773]		gelatinase	+
[Ref.: #68382]		leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]		lipase (C 14)	-		* from API zym
[Ref.: #68382]		N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]		naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123387]		oxidase	+
[Ref.: #68382]		trypsin	+	3.4.21.4	* from API zym
[Ref.: #123387]		urease	-	3.5.1.5
[Ref.: #68382]		valine arylamidase	+		* from API zym
		Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123387]	12206	-	+	+	+	-	+	+	-	+	-	+	+	-	-	-	-	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7150]	Sample type/isolated from	greenhouse soil
[Ref.: #7150]	Geographic location (country and/or sea, region)	Suncheon city
[Ref.: #7150]	Country	Republic of Korea
[Ref.: #7150]	Country ISO 3 Code	KOR
[Ref.: #7150]	Continent	Asia

[Ref.: #123387]	Sample type/isolated from	Environment, Greenhouse soil
[Ref.: #123387]	Geographic location (country and/or sea, region)	Suncheon
[Ref.: #123387]	Country	Republic of Korea
[Ref.: #123387]	Country ISO 3 Code	KOR
[Ref.: #123387]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Greenhouse
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

Global distribution of 16S sequence DQ222428 (>99% sequence identity) for Flavobacterium suncheonense from Microbeatlas

Aquatic Samples	1259
Soil Samples	949
Animal Samples	410
Plant Samples	92
Total Samples	2710

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7150]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123387]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7150]	Flavobacterium suncheonense strain GH29-5 16S ribosomal RNA gene, partial sequence	DQ222428	1442	ENA	350894 tax ID

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium suncheonense GH29-5 = DSM 17707	GCA_000430025	scaffold	GenBank	1121899 tax ID	*
[Ref.: #66792]	Flavobacterium suncheonense GH29-5 = DSM 17707	GCA_000769835	contig	GenBank	1121899 tax ID	*
[Ref.: #66792]	Flavobacterium suncheonense DSM 17707	1121899.3	wgs	PATRIC	1121899 tax ID	*
[Ref.: #66792]	Flavobacterium suncheonense GH29-5 = DSM 17707	1121899.5	wgs	PATRIC	1121899 tax ID	*
[Ref.: #66792]	Flavobacterium suncheonense GH29-5, DSM 17707	2524614632	draft	JGI IMG/M	1121899 tax ID	*
[Ref.: #66792]	Flavobacterium suncheonense GH29-5, DSM 17707	2630968897	draft	JGI IMG/M	1121899 tax ID	*

[Ref.: #7150]	GC-content	39.0 mol%
[Ref.: #31773]	GC-content	39 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium suncheonense GH29-5 = DSM 17707 DSM 17707 NCBI: GCA_000430025.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium suncheonense GH29-5 = DSM 17707 DSM 17707 NCBI: GCA_000430025.1
[Ref.: #69480]	motile	no	91.016	no
[Ref.: #69480]	flagellated	no	96.613	yes
[Ref.: #69480]	gram-positive	no	98.925	yes
[Ref.: #69480]	anaerobic	no	99.184	no
[Ref.: #69480]	aerobic	yes	89.51	no
[Ref.: #69480]	halophile	no	96.559	yes
[Ref.: #69480]	spore-forming	no	95.539	no
[Ref.: #69480]	thermophile	no	97.754	yes
[Ref.: #69480]	glucose-util	yes	78.135	no
[Ref.: #69480]	glucose-ferment	no	93.644	no

Availability in culture collections External links

Culture collection no.

DSM 17707, CIP 109901, KACC 11423

SI-ID 297213

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	High-quality draft genome sequence of Flavobacterium suncheonense GH29-5(T) (DSM 17707(T)) isolated from greenhouse soil in South Korea, and emended description of Flavobacterium suncheonense GH29-5(T).	Tashkandy N, Sabban S, Fakieh M, Meier-Kolthoff JP, Huang S, Tindall BJ, Rohde M, Baeshen MN, Baeshen NA, Lapidus A, Copeland A, Pillay M, Reddy TB, Huntemann M, Pati A, Ivanova N, Markowitz V, Woyke T, Goker M, Klenk HP, Kyrpides NC, Hahnke RL	Stand Genomic Sci	10.1186/s40793-016-0159-5	2016	*
Phylogeny	Flavobacterium daejeonense sp. nov. and Flavobacterium suncheonense sp. nov., isolated from greenhouse soils in Korea.	Kim BY, Weon HY, Cousin S, Yoo SH, Kwon SW, Go SJ, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64243-0	2006	*

References

#7150

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17707

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31773

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28046 (see below)

#42251 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75028

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297213.1 )

#123387 Collection of Institut Pasteur ; Curators of the CIP; CIP 109901

#28046

IJSEM 1645 2006 ( DOI 10.1099/ijs.0.64243-0 , PubMed 16825643 )

* These data were automatically processed and therefore are not curated

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