Name: Sporotomaculum syntrophicum ST-92
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5534

Type strain:

Species: Sporotomaculum syntrophicum

Strain Designation: ST-92

Culture col. no.: DSM 15093, JCM 11475

Strain history: H. Tamaki ST-92.

NCBI tax ID(s): 180441 (species)

SI-ID 111724

JCM 11475, DSM 15093

Other strains from Sporotomaculum syntrophicum

S. syntrophicum FB, DSM 14795, JCM 11495, CIP 108100 (type strain)
S. syntrophicum FB+M.hungatei, DSM 14947

Section

Sporotomaculum syntrophicum ST-92 is a psychrophilic bacterium that was isolated from river sediments.

psychrophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Peptococcaceae*
	Genus	*Sporotomaculum*
	Species	**Sporotomaculum syntrophicum**
	Full Scientific Name (LPSN)	Sporotomaculum syntrophicum Qiu et al. 2003

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5706]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #5706]

Culture medium growth

[Ref.: #5706]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5706]

Culture medium composition

expand / minimize

[Ref.: #5706]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #5706]

Culture medium growth

[Ref.: #5706]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5706]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5706]			growth	15 °C
[Ref.: #67770]			growth	15 °C

[Ref.: #5706]	Temperature range	psychrophilic
[Ref.: #67770]	Temperature range	psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5706]	Sample type/isolated from	river sediments
[Ref.: #5706]	Geographic location (country and/or sea, region)	Ibaraki pref., Shin River
[Ref.: #5706]	Country	Japan
[Ref.: #5706]	Country ISO 3 Code	JPN
[Ref.: #5706]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Freshwater river sediments
[Ref.: #67770]	Geographic location (country and/or sea, region)	Ibaraki Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#River (Creek)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5706]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5706]	Flavobacterium limicola gene for 16S ribosomal RNA, strain:ST-92	AB075232	1476	ENA	180441 tax ID

[Ref.: #67770]

GC-content

34.6 mol%

Availability in culture collections External links

[Ref.: #5706]

Culture collection no.

DSM 15093, JCM 11475

[Ref.: #75017]

SI-ID 111724

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Sporotomaculum syntrophicum sp. nov., a novel anaerobic, syntrophic benzoate-degrading bacterium isolated from methanogenic sludge treating wastewater from terephthalate manufacturing.	Qiu YL, Sekiguchi Y, Imachi H, Kamagata Y, Tseng IC, Cheng SS, Ohashi A, Harada H	Arch Microbiol	10.1007/s00203-003-0521-z	2003	*
Phylogeny	Flavobacterium limicola sp. nov., a psychrophilic, organic-polymer-degrading bacterium isolated from freshwater sediments.	Tamaki H, Hanada S, Kamagata Y, Nakamura K, Nomura N, Nakano K, Matsumura M	Int J Syst Evol Microbiol	10.1099/ijs.0.02369-0	2003	*

References

#5706

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15093

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#75017

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID111724.1 )

* These data were automatically processed and therefore are not curated

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