Name: Anoxybacillus kamchatkensis JW/VK-KG4
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 553

Type strain:

Species: Anoxybacillus kamchatkensis

Strain Designation: JW/VK-KG4

Culture col. no.: DSM 14988, ATCC BAA-549

Strain history: <- J. Wiegel; JW/VK-KG4 <- V. V. Kevbrin

NCBI tax ID(s): 265546 (species)

SI-ID 291123

ATCC BAA-549, DSM 14988

Special Collections

DSMZ

Section

Anoxybacillus kamchatkensis JW/VK-KG4 is a spore-forming, thermophilic bacterium that was isolated from combined water-sediment.

spore-forming
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Bacillota*
	Class	*Bacilli*
	Order	*Caryophanales*
	Family	*Bacillaceae*
	Genus	*Anoxybacillus*
	Species	**Anoxybacillus kamchatkensis**
	Full Scientific Name (LPSN)	Anoxybacillus kamchatkensis Kevbrin et al. 2006

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5656]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #5656]

Culture medium growth

[Ref.: #5656]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5656]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5656]			growth	55 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]

Ability of spore formation

yes Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5656]	Sample type/isolated from	combined water-sediment
[Ref.: #5656]	Geographic location (country and/or sea, region)	Kamchatka penn.
[Ref.: #5656]	Country	Russia
[Ref.: #5656]	Country ISO 3 Code	RUS
[Ref.: #5656]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF510985 (>99% sequence identity) for Anoxybacillus from Microbeatlas

Aquatic Samples	335
Soil Samples	183
Animal Samples	1423
Plant Samples	87
Total Samples	2028

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5656]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5656]	Anoxybacillus kamchatkensis 16S ribosomal RNA gene, partial sequence	AF510985	1548	GenBank ENA	196180 tax ID
[Ref.: #124043]	Anoxybacillus kamchatkensis strain DSM 14988 16S ribosomal RNA gene, partial sequence.	OP218102	1372	GenBank ENA	265546 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Anoxybacillus ayderensis DSM 14988	GCA_013761015	scaffold	GenBank ENA	265546 tax ID	*
[Ref.: #66792]	Anoxybacillus kamchatkensis strain DSM 14988	196180.5	wgs	PATRIC	196180 tax ID	*
[Ref.: #66792]	Anoxybacillus kamchatkensis DSM 14988	2861196614	draft	JGI IMG/M	196180 tax ID	*

[Ref.: #5656]

GC-content

42 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Anoxybacillus kamchatkensis DSM 14988 NCBI: GCA_013761015.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	yes	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Anoxybacillus kamchatkensis DSM 14988 NCBI: GCA_013761015.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	yes	78.699	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	76.856	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	50.62	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	yes	86.732	no
[Ref.: #69480]	thermophilic	thermophileⓘ	yes	72.762	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	79.379	no

Availability in culture collections External links

[Ref.: #5656]

Culture collection no.

DSM 14988, ATCC BAA-549

[Ref.: #70231]

SI-ID 291123

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Whole-Genome Sequence Data Analysis of Anoxybacillus kamchatkensis NASTPD13 Isolated from Hot Spring of Myagdi, Nepal.	Yadav P, Sharma S, Bhattarai T, Sreerama L, Prasad GS, Sahni G, Maharjan J	Biomed Res Int	10.1155/2021/1869748	2021	*
Phylogeny	Anoxybacillus kamchatkensis sp. nov., a novel thermophilic facultative aerobic bacterium with a broad pH optimum from the Geyser valley, Kamchatka.	Kevbrin VV, Zengler K, Lysenko AM, Wiegel J	Extremophiles	10.1007/s00792-005-0479-7	2005	*
Phylogeny	Genome-based reclassification of Anoxybacillus kamchatkensis Kevbrin et al. 2005 as a later heterotypic synonym of Anoxybacillus ayderensis Dulger et al. 2004.	Inan Bektas K, Nalcaoglu A, Guler HI, Canakci S, Belduz AO	Arch Microbiol	10.1007/s00203-022-03201-4	2022	*

References

#5656

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14988

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70231

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID291123.1 )

#124043

Dr. Isabel Schober, Dr. Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Anoxybacillus kamchatkensis in external resources:
SILVA
BRENDA
PANGAEA
GBIF

Anoxybacillus kamchatkensis DSM 14988

Anoxybacillus kamchatkensis DSM 14988

Change proposal

Change proposal