Name: Flavobacterium hydatis N
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5512

Type strain:

Species: Flavobacterium hydatis

Strain Designation: N

Culture col. no.: DSM 2063, ATCC 29551, CCUG 35201, NCIMB 2215, LMG 8385, Cy aq1, CIP 104741, Cy aq 1

Strain history: CIP <- 1996, J.F. Bernardet, INRA, Jouy en Josas, France <- DSMZ <- H. Reichenbach: strain Cy aq 1 <- W.R. Strohl: strain N

NCBI tax ID(s): 991 (species)

SI-ID 10488

LMG 8385, ATCC 29551, CCUG 35201, DSM 2063, IFO 14958, NCIMB 2215, NCMB 2215, CIP 104741, IAM 12365, NBRC 14958, NRRL B-14732, KCTC 12326, JCM 20519

Section

Flavobacterium hydatis N is a facultative anaerobe, mesophilic, Gram-negative animal pathogen that forms circular colonies and was isolated from gills of diseased salmon.

colony-forming
Gram-negative
motile
rod-shaped
animal pathogen
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium hydatis**
	Full Scientific Name (LPSN)	Flavobacterium hydatis Bernardet et al. 1996

Synonym

Cytophaga aquatilis

Information on morphological and physiological properties Morphology

[Ref.: #43345]	Gram stain	negative
[Ref.: #119996]	Gram stain	negative

[Ref.: #43345]	Cell length	1.5-15 µm

[Ref.: #43345]	Cell width	0.4-0.7 µm

[Ref.: #43345]	Cell shape	rod-shaped
[Ref.: #119996]	Cell shape	rod-shaped

[Ref.: #43345]	Motility	yes
[Ref.: #119996]	Motility	no

[Ref.: #43345]	Flagellum arrangement	gliding

[Ref.: #43345]	Colony color	yellow
[Ref.: #43345]	Colony shape	circular

[Ref.: #43345]	Pigment production	yes
[Ref.: #43345]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #699]

Culture medium

CY-AGAR (DSMZ Medium 67)

[Ref.: #699]

Culture medium growth

[Ref.: #699]

Culture medium link

Medium recipe at MediaDive

[Ref.: #699]

Culture medium composition

expand / minimize

[Ref.: #39084]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #39084]

Culture medium growth

[Ref.: #39084]

Culture medium composition

expand / minimize

[Ref.: #43345]

Culture medium

Nutrient agar (NA)

[Ref.: #43345]

Culture medium growth

[Ref.: #43345]

Culture medium

Tryptic Soy Agar (TSA)

[Ref.: #43345]

Culture medium growth

[Ref.: #119996]

Culture medium

CIP Medium 3

[Ref.: #119996]

Culture medium growth

[Ref.: #119996]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #119996]

Culture medium

CIP Medium 72

[Ref.: #119996]

Culture medium growth

[Ref.: #119996]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #43345]

Culture medium

Marine agar (MA)

[Ref.: #43345]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #699]		growth	25-30 °C
[Ref.: #39084]		growth	22 °C
[Ref.: #43345]		optimum	20-25 °C
[Ref.: #43345]		growth	5-35 °C
[Ref.: #52588]		growth	22 °C
[Ref.: #119996]		growth	22-30 °C
[Ref.: #119996]	no	growth	10 °C
[Ref.: #119996]	no	growth	37 °C
[Ref.: #119996]	no	growth	41 °C

[Ref.: #699]	Temperature range	mesophilic
[Ref.: #39084]	Temperature range	psychrophilic
[Ref.: #52588]	Temperature range	psychrophilic
[Ref.: #119996]	Temperature range	psychrophilic
[Ref.: #119996]	Temperature range	mesophilic
[Ref.: #119996]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43345]	Oxygen tolerance	facultative anaerobe
[Ref.: #52588]	Oxygen tolerance	aerobe
[Ref.: #119996]	Oxygen tolerance	facultative anaerobe

	Salt	Tested relation		Salt conc.
[Ref.: #43345]	NaCl		growth	0-2	%(w/v)
[Ref.: #43345]	NaCl		optimum	0	%(w/v)
[Ref.: #119996]	NaCl		growth	0-8	%
[Ref.: #119996]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #43345]	agar ChEBI	-	degradation
[Ref.: #43345]	alginate ChEBI	-	degradation
[Ref.: #43345]	ammonium ChEBI	+	nitrogen source
[Ref.: #43345]	arabinose ChEBI	+	builds acid from
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #43345]	carboxymethylcellulose ChEBI	-	hydrolysis
[Ref.: #43345]	casamino acids	+	nitrogen source
[Ref.: #43345]	casein	+	degradation
[Ref.: #43345]	cellobiose ChEBI	+	builds acid from
[Ref.: #43345]	chitin ChEBI	+	degradation
[Ref.: #43345]	citrate ChEBI	-	assimilation
[Ref.: #119996]	citrate ChEBI	-	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #43345]	dna ChEBI	+	degradation
[Ref.: #43345]	esculin ChEBI	+	degradation
[Ref.: #119996]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #43345]	fructose ChEBI	+	builds acid from
[Ref.: #43345]	galactitol ChEBI	+	builds acid from
[Ref.: #43345]	galactose ChEBI	+	builds acid from
[Ref.: #43345]	gelatin ChEBI	+	degradation
[Ref.: #68369]	gelatin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #43345]	glucose ChEBI	+	assimilation
[Ref.: #43345]	glucose ChEBI	+	builds acid from
[Ref.: #43345]	glycerol ChEBI	+	builds acid from
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #43345]	lactose ChEBI	+	builds acid from
[Ref.: #43345]	lecithin ChEBI	-	hydrolysis
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #43345]	maltose ChEBI	+	builds acid from
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #43345]	mannitol ChEBI	+	builds acid from
[Ref.: #43345]	mannose ChEBI	+	builds acid from
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #43345]	nitrate ChEBI	+	reduction
[Ref.: #43345]	nitrate ChEBI	+	nitrogen source
[Ref.: #119996]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	+	reduction	* from API 20NE
[Ref.: #119996]	nitrite ChEBI	-	reduction
[Ref.: #43345]	pectin ChEBI	+	degradation
[Ref.: #43345]	peptone	+	nitrogen source
[Ref.: #43345]	raffinose ChEBI	+	builds acid from
[Ref.: #43345]	starch ChEBI	+	degradation
[Ref.: #43345]	sucrose ChEBI	+	builds acid from
[Ref.: #43345]	tributyrin ChEBI	+	hydrolysis
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #43345]	tween 20 ChEBI	+	degradation
[Ref.: #43345]	tween 40 ChEBI	+	degradation
[Ref.: #43345]	tween 60 ChEBI	+	degradation
[Ref.: #43345]	tween 80 ChEBI	+	degradation
[Ref.: #43345]	tyrosine ChEBI	+	degradation
[Ref.: #43345]	urea ChEBI	-	degradation
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #43345]	xylitol ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #119996]	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no
[Ref.: #43345]	ampicillin ChEBI		yes
[Ref.: #43345]	chloramphenicol ChEBI	yes	yes
[Ref.: #43345]	erythromycin ChEBI		yes
[Ref.: #43345]	kanamycin ChEBI		yes
[Ref.: #43345]	nalidixic acid ChEBI		yes
[Ref.: #43345]	neomycin ChEBI		yes
[Ref.: #43345]	novobiocin ChEBI		yes
[Ref.: #43345]	penicillin g ChEBI		yes
[Ref.: #43345]	polymyxin b ChEBI		yes
[Ref.: #43345]	tetracycline ChEBI		yes
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #43345]	hydrogen sulfide ChEBI	no
[Ref.: #43345]	indole ChEBI	no
[Ref.: #119996]	indole ChEBI	no
[Ref.: #68369]	indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #119996]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #119996]	amylase	-
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #43345]	beta-galactosidase	+	3.2.1.23
[Ref.: #119996]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #119996]	caseinase	+	3.4.21.50
[Ref.: #43345]	catalase	+	1.11.1.6
[Ref.: #119996]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #43345]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #119996]	DNase	-
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #119996]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #119996]	gelatinase	+
[Ref.: #68369]	gelatinase	-		* from API 20NE
[Ref.: #119996]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #119996]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #119996]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #119996]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #119996]	oxidase	+
[Ref.: #119996]	phenylalanine ammonia-lyase	+	4.3.1.24
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #119996]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #52588]

Fatty acid	Percentage	ECL
C15:0 ISO	23.5	14.621
C16:1 ω7c	15.7	15.819
C17:0 iso 3OH	10.3	18.161
C15:0 ISO 3OH	8.6	16.135
C15:1 ISO G	5.8	14.441
C15:0	5.6	15
C16:0 3OH	4.5	17.52
C17:1 ω9c ISO	4.1	16.416
C15:1 ω6c	2.9	14.856
C16:0	2.8	16
C17:1 ω6c	2.5	16.862
C16:0 iso 3OH	1.9	17.145
C17:1 ISO I/C16:0 DMA	1.7	16.481
unknown 16.580	1.1	16.58
C16:0 iso	0.9	15.626
C15:0 ANTEISO	0.9	14.711
C14:0	0.7	14
C14:0 3OH/C16:1 ISO I	0.6	15.485
C17:1 ω8c	0.6	16.792
Unidentified	0.5	15.946
C16:1 ω5c	0.5	15.908
C18:2 ω6,9c/C18:0 ANTE	0.4	17.724
C17:0 iso	0.4	16.629
unknown 13.566	0.4	13.566
C16:1 ISO H	0.3	15.461
C18:1 ω5c	0.3	17.919
Unidentified	0.3	17.79
C16:1 ω9c	0.3	15.774
C14:0 ISO	0.3	13.618
C17:0 3OH	0.3	18.535
C15:1 ω8c	0.3	14.792
unknown 11.541	0.2	11.541
C13:0 iso	0.2	12.612
C15:0 2OH	0.2	16.217
C14:0 ISO 3OH	0.2	15.117
C17:0 2OH	0.2	18.249

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #52588]	7759	+	-	-	-	-	+	-	+	+	-	+	-	+	+	-	-	-	-	-	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #119996]	797	not determinedn.d.	+	-	+	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #52588]	3927	-	+	+	+	-	+	+	+	-	-	+	+	-	-	-	+	-	+	-	-
[Ref.: #119996]	8162	-	+	+	+	-	+	+	+	-	-	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #699]	Sample type/isolated from	gills of diseased salmon
[Ref.: #699]	Country	USA
[Ref.: #699]	Country ISO 3 Code	USA
[Ref.: #699]	Continent	North America

[Ref.: #52588]	Sample type/isolated from	Gills of diseased salmon
[Ref.: #52588]	Geographic location (country and/or sea, region)	Michigan
[Ref.: #52588]	Country	USA
[Ref.: #52588]	Country ISO 3 Code	USA
[Ref.: #52588]	Continent	North America

[Ref.: #119996]	Sample type/isolated from	Animal, Gills of diseased salmon, fish hatchery
[Ref.: #119996]	Geographic location (country and/or sea, region)	Platte river, Michigan
[Ref.: #119996]	Country	United States of America
[Ref.: #119996]	Country ISO 3 Code	USA
[Ref.: #119996]	Continent	North America
[Ref.: #119996]	Isolation date	1974
* marker position based on {}

Isolation sources categories

#Host	#Fishes	#Salmonidae
#Host Body-Site	#Organ	#Vascular system

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM230487 (>99% sequence identity) for Flavobacterium hydatis from Microbeatlas

Aquatic Samples	366
Soil Samples	73
Animal Samples	73
Plant Samples	8
Total Samples	520

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #699]	Pathogenicity (animal)	yes
[Ref.: #699]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #119996]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #699]	Flavobacterium hydatis strain ATCC 29551 16S ribosomal RNA gene, partial sequence	M58764	1462	ENA	991 tax ID
[Ref.: #20218]	Flavobacterium hydatis strain ATCC 29551 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY753068	569	ENA	991 tax ID	*
[Ref.: #20218]	Flavobacterium hydatis partial 16S rRNA gene, type strain DSM 2063	AM230487	1423	ENA	991 tax ID	*
[Ref.: #20218]	Flavobacterium hydatis strain DSM 2063 16S ribosomal RNA gene, partial sequence	JX657044	1256	ENA	991 tax ID	*
[Ref.: #20218]	Flavobacterium hydatis gene for 16S ribosomal RNA, partial sequence, strain: IAM 12365	D12656	1258	ENA	991 tax ID	*
[Ref.: #20218]	Flavobacterium hydatis gene for 16S rRNA, partial sequence, strain: NBRC 14958	AB680722	1439	ENA	991 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium hydatis ATCC 29551	GCA_002217335	scaffold	GenBank	991 tax ID	*
[Ref.: #66792]	Flavobacterium hydatis DSM 2063	GCA_000737695	contig	GenBank	991 tax ID	*
[Ref.: #66792]	Flavobacterium hydatis strain ATCC 29551	991.14	wgs	PATRIC	991 tax ID	*
[Ref.: #66792]	Flavobacterium hydatis strain DSM 2063	991.19	wgs	PATRIC	991 tax ID	*
[Ref.: #66792]	Flavobacterium hydatis DSM 2063	2617271209	draft	JGI IMG/M	991 tax ID	*

[Ref.: #699]	GC-content	33.6 mol%
[Ref.: #43345]	GC-content	32-34 mol%	Buoyant density centrifugation (BD)
[Ref.: #699]	GC-content	32.7 mol%	sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium hydatis ATCC 29551 NCBI: GCA_002217335.1
[Ref.: #69480]	flagellated	no	93.683	yes
[Ref.: #69480]	gram-positive	no	98.283	no
[Ref.: #69480]	anaerobic	no	99.732	no
[Ref.: #69480]	aerobic	yes	86.834	no
[Ref.: #69480]	halophile	no	95.77	no
[Ref.: #69480]	spore-forming	no	93.505	no
[Ref.: #69480]	thermophile	no	99.653	no
[Ref.: #69480]	glucose-util	yes	89.694	yes
[Ref.: #69480]	motile	no	87.865	no
[Ref.: #69480]	glucose-ferment	no	89.61	yes

Availability in culture collections External links

[Ref.: #699]

Culture collection no.

DSM 2063, ATCC 29551, CCUG 35201, NCIMB 2215, LMG 8385, Cy aq1, CIP 104741, Cy aq 1

[Ref.: #74997]

SI-ID 10488

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium circumlabens sp. nov. and Flavobacterium cupreum sp. nov., two psychrotrophic species isolated from Antarctic environmental samples.	Kralova S, Busse HJ, Svec P, Maslanova I, Stankova E, Bartak M, Sedlacek I	Syst Appl Microbiol	10.1016/j.syapm.2018.12.005	2018	*
Phylogeny	Isolation and characterization of a new Cytophaga species implicated in a work-related lung disease.	Liebert CA, Hood MA, Deck FH, Bishop K, Flaherty DK	Appl Environ Microbiol	10.1128/aem.48.5.936-943.1984	1984	*

References

#699	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2063

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39084 ; Curators of the CIP;

#43345

; 4: 145 - 174 ISBN 978 ( DOI 10.1007/978-0-387-68572-4 )

#52588 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 35201

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#74997

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID10488.1 )

#119996 Collection of Institut Pasteur ; Curators of the CIP; CIP 104741
* These data were automatically processed and therefore are not curated

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Flavobacterium hydatis ATCC 29551

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