Flavobacterium hydatis (DSM 2063, ATCC 29551, CCUG 35201)

Name: Flavobacterium hydatis (DSM 2063, ATCC 29551, CCUG 35201)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5512

Type strain

Strain Designation N

Culture col. no. DSM 2063 ATCC 29551 CCUG 35201 NCIMB 2215 LMG 8385 4 more

NCBI tax ID(s) 991

Special Collections DSMZ CCUG CIP

History DSMZ <- H. Reichenbach, Cy aq1 <- W.R. Strohl, strain N (Cytophaga aquatilis) CIP <- 1996, J.F. Bernardet, INRA, Jouy en Josas, France <- DSMZ <- H. Reichenbach: strain Cy aq 1 <- W.R. Strohl: strain N

Links

Flavobacterium hydatis N is a facultative anaerobe, Gram-negative, motile animal pathogen that forms circular colonies and was isolated from gills of diseased salmon.

Gram-negative motile rod-shaped colony-forming facultative anaerobe animal pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 10488

LMG 8385,ATCC 29551,CCUG 35201,DSM 2063,IFO 14958,NCIMB 2215,NCMB 2215,CIP 104741,IAM 12365,NBRC 14958,NRRL B-14732,KCTC 12326,JCM 20519

@ref 20215

Last LPSN update 2026-05-29 08:26:11

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium hydatis

Full scientific name Flavobacterium hydatis Bernardet et al. 1996

Synonyms (1)

Cytophaga aquatilis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
43345	negative	1.5-15 µm	0.4-0.7 µm	rod-shaped	gliding
119996	negative			rod-shaped
125438						92
125438	negative					97.727
125439	negative					98.6

Colony morphology

@ref	Colony color	Colony shape
43345	yellow	circular

Pigmentation

@ref	Production	Name
43345		flexirubin type pigments

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
699	CY-AGAR (DSMZ Medium 67)	Medium recipe at MediaDive	Name: CY-AGAR (DSMZ Medium 67) Composition: Agar 15.0 g/l Casitone 3.0 g/l CaCl2 x 2 H2O 1.36 g/l Yeast extract 1.0 g/l Distilled water
39084	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
43345	Nutrient agar (NA)
43345	Tryptic Soy Agar (TSA)
119996	CIP Medium 3	Medium recipe at CIP
119996	CIP Medium 72	Medium recipe at CIP
43345	Marine agar (MA)

Culture temp

@ref	Growth	Type	Temperature (°C)
699	positive	growth	25-30
39084	positive	growth	22
43345	positive	optimum	20-25
43345	positive	growth	5-35
52588	positive	growth	22
119996	positive	growth	22-30
119996	negative	growth	10
119996	negative	growth	37
119996	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
43345	facultative anaerobe
52588	aerobe
119996	facultative anaerobe
125439	facultative anaerobe	91.084

Spore formation

@ref	Spore formation	Confidence
125439		99.856

Halophily

@ref	Salt	Growth	Tested relation	Concentration
43345	NaCl	positive	growth	0-2 %(w/v)
43345	NaCl	positive	optimum	0 %(w/v)
119996	NaCl	positive	growth	0-8 %
119996	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68369	17128 ChEBI	adipate	-	assimilation	from API 20NE
43345	2509 ChEBI	agar	-	degradation
43345	58187 ChEBI	alginate	-	degradation
43345	28938 ChEBI	ammonium	+	nitrogen source
43345	22599 ChEBI	arabinose	+	builds acid from
68369	29016 ChEBI	arginine	-	hydrolysis	from API 20NE
43345	85146 ChEBI	carboxymethylcellulose	-	hydrolysis
43345		casamino acids	+	nitrogen source
43345		casein	+	degradation
43345	17057 ChEBI	cellobiose	+	builds acid from
43345	17029 ChEBI	chitin	+	degradation
43345	16947 ChEBI	citrate	-	assimilation
119996	16947 ChEBI	citrate	-	carbon source
68369	17634 ChEBI	D-glucose	+	assimilation	from API 20NE
68369	17634 ChEBI	D-glucose	-	fermentation	from API 20NE
68369	16899 ChEBI	D-mannitol	-	assimilation	from API 20NE
68369	16024 ChEBI	D-mannose	+	assimilation	from API 20NE
68369	27689 ChEBI	decanoate	-	assimilation	from API 20NE
43345	16991 ChEBI	dna	+	degradation
43345	4853 ChEBI	esculin	+	degradation
119996	4853 ChEBI	esculin	+	hydrolysis
68369	4853 ChEBI	esculin	+	hydrolysis	from API 20NE
43345	28757 ChEBI	fructose	+	builds acid from
43345	16813 ChEBI	galactitol	+	builds acid from
43345	28260 ChEBI	galactose	+	builds acid from
43345	5291 ChEBI	gelatin	+	degradation
68369	5291 ChEBI	gelatin	-	hydrolysis	from API 20NE
68369	24265 ChEBI	gluconate	-	assimilation	from API 20NE
43345	17234 ChEBI	glucose	+	assimilation
43345	17234 ChEBI	glucose	+	builds acid from
43345	17754 ChEBI	glycerol	+	builds acid from
68369	30849 ChEBI	L-arabinose	-	assimilation	from API 20NE
43345	17716 ChEBI	lactose	+	builds acid from
43345	61995 ChEBI	lecithin	-	hydrolysis
68369	25115 ChEBI	malate	-	assimilation	from API 20NE
43345	17306 ChEBI	maltose	+	builds acid from
68369	17306 ChEBI	maltose	+	assimilation	from API 20NE
43345	29864 ChEBI	mannitol	+	builds acid from
43345	37684 ChEBI	mannose	+	builds acid from
68369	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 20NE
43345	17632 ChEBI	nitrate	+	reduction
43345	17632 ChEBI	nitrate	+	nitrogen source
119996	17632 ChEBI	nitrate	+	reduction
68369	17632 ChEBI	nitrate	+	reduction	from API 20NE
119996	16301 ChEBI	nitrite	-	reduction
43345	17309 ChEBI	pectin	+	degradation
43345		peptone	+	nitrogen source
43345	16634 ChEBI	raffinose	+	builds acid from
43345	28017 ChEBI	starch	+	degradation
43345	17992 ChEBI	sucrose	+	builds acid from
43345	35020 ChEBI	tributyrin	+	hydrolysis
68369	27897 ChEBI	tryptophan	-	energy source	from API 20NE
43345	53424 ChEBI	tween 20	+	degradation
43345	53423 ChEBI	tween 40	+	degradation
43345	53425 ChEBI	tween 60	+	degradation
43345	53426 ChEBI	tween 80	+	degradation
43345	18186 ChEBI	tyrosine	+	degradation
43345	16199 ChEBI	urea	-	degradation
68369	16199 ChEBI	urea	-	hydrolysis	from API 20NE
43345	17151 ChEBI	xylitol	+	builds acid from

Antibiotic resistance

@ref	ChEBI	Metabolite
119996		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
43345	28971	ampicillin
43345	17698	chloramphenicol
43345	48923	erythromycin
43345	6104	kanamycin
43345	100147	nalidixic acid
43345	7507	neomycin
43345	28368	novobiocin
43345	18208	penicillin g
43345	8309	polymyxin b
43345	27902	tetracycline

Metabolite production

@ref	Chebi-ID	Metabolite
43345	16136 ChEBI	hydrogen sulfide
43345	35581 ChEBI	indole
68369	35581 ChEBI	indole	from API 20NE
119996	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68369	35581 ChEBI	indole	-	from API 20NE

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119996	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119996	amylase	-
68369	arginine dihydrolase	-	3.5.3.6	from API 20NE
43345	beta-galactosidase	+	3.2.1.23
68382	beta-galactosidase	-	3.2.1.23	from API zym
119996	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68369	beta-glucosidase	+	3.2.1.21	from API 20NE
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119996	caseinase	+	3.4.21.50
43345	catalase	+	1.11.1.6
119996	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
43345	cytochrome oxidase	+	1.9.3.1
68369	cytochrome oxidase	+	1.9.3.1	from API 20NE
119996	DNase	-
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119996	gamma-glutamyltransferase	+	2.3.2.2
119996	gelatinase	+
68369	gelatinase	-		from API 20NE
119996	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
119996	lipase	-
68382	lipase (C 14)	-		from API zym
119996	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119996	ornithine decarboxylase	-	4.1.1.17
119996	oxidase	+
119996	phenylalanine ammonia-lyase	+	4.3.1.24
68382	trypsin	-	3.4.21.4	from API zym
119996	urease	-	3.5.1.5
68369	urease	-	3.5.1.5	from API 20NE
68382	valine arylamidase	+		from API zym

Fatty acid profile

Metadata FA analysis

@ref

52588

Fatty acid	Percentage	ECL
C15:0 ISO	23.5	14.621
C16:1 ω7c	15.7	15.819
C17:0 iso 3OH	10.3	18.161
C15:0 ISO 3OH	8.6	16.135
C15:1 ISO G	5.8	14.441
C15:0	5.6	15
C16:0 3OH	4.5	17.52
C17:1 ω9c ISO	4.1	16.416
C15:1 ω6c	2.9	14.856
C16:0	2.8	16
C17:1 ω6c	2.5	16.862
C16:0 iso 3OH	1.9	17.145
C17:1 ISO I/C16:0 DMA	1.7	16.481
unknown 16.580	1.1	16.58
C16:0 iso	0.9	15.626
C15:0 ANTEISO	0.9	14.711
C14:0	0.7	14
C14:0 3OH/C16:1 ISO I	0.6	15.485
C17:1 ω8c	0.6	16.792
Unidentified	0.5	15.946
C16:1 ω5c	0.5	15.908
C18:2 ω6,9c/C18:0 ANTE	0.4	17.724
C17:0 iso	0.4	16.629
unknown 13.566	0.4	13.566
C16:1 ISO H	0.3	15.461
C18:1 ω5c	0.3	17.919
Unidentified	0.3	17.79
C16:1 ω9c	0.3	15.774
C14:0 ISO	0.3	13.618
C17:0 3OH	0.3	18.535
C15:1 ω8c	0.3	14.792
unknown 11.541	0.2	11.541
C13:0 iso	0.2	12.612
C15:0 2OH	0.2	16.217
C14:0 ISO 3OH	0.2	15.117
C17:0 2OH	0.2	18.249

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
52588	-	+	+	+	-	+	+	+	-	-	+	+	-	-	-	+	-	+	-	-
119996	-	+	+	+	-	+	+	+	-	-	+	+	-	-	-	+	-	+	-	-

API 20NE

@ref	Reduction of nitratesNO3	TRP	GLU_ Ferm	ADH (Arg)	URE	ESC	GEL	PNPG	GLU_ Assim	ARA	MNE	MAN	NAG	MAL	GNT	CAP	ADI	MLT	CIT	PAC	OX
52588	+	-	-	-	-	+	-	+	+	-	+	-	+	+	-	-	-	-	-	-	+

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119996	not determinedn.d.	+	-	+	-	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Fishes	#Salmonidae
#Host Body-Site	#Organ	#Vascular system

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Isolation date
699	gills of diseased salmon		USA	USA	North America
52588	Gills of diseased salmon	Michigan	USA	USA	North America
119996	Animal, Gills of diseased salmon, fish hatchery	Platte river, Michigan	United States of America	USA	North America	1974

Taxonmaps

69479

Global distribution of 16S sequence AM230487 (>99% sequence identity) for Flavobacterium hydatis from Microbeatlas

Aquatic Samples	366
Soil Samples	73
Animal Samples	73
Plant Samples	8
Total Samples	520

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
699		1	Risk group (German classification) According to TRBA 466
119996		1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM221733v1 assembly for Flavobacterium hydatis ATCC 29551	scaffold	GCA_002217335	991.14	8063398661	991	63.41
66792	ASM73769v1 assembly for Flavobacterium hydatis DSM 2063	contig	GCA_000737695	991.19	2617271209	991	58.98

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Flavobacterium hydatis strain ATCC 29551 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY753068	569	991
20218	Flavobacterium hydatis partial 16S rRNA gene, type strain DSM 2063	AM230487	1423	991
20218	Flavobacterium hydatis strain DSM 2063 16S ribosomal RNA gene, partial sequence	JX657044	1256	991
20218	Flavobacterium hydatis gene for 16S ribosomal RNA, partial sequence, strain: IAM 12365	D12656	1258	991
20218	Flavobacterium hydatis gene for 16S rRNA, partial sequence, strain: NBRC 14958	AB680722	1439	991
699	Flavobacterium hydatis strain ATCC 29551 16S ribosomal RNA gene, partial sequence	M58764	1462	991

GC content

@ref	GC-content (mol%)	Method
699	33.6
43345	32-34	Buoyant density centrifugation (BD)
699	32.7	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM221733v1 assembly for Flavobacterium hydatis ATCC 29551
NCBI: GCA_002217335

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	facultative anaerobe	91.08	no
125439	gram_stain	BacteriaNetⓘ	negative	98.60	no
125439	motility	BacteriaNetⓘ	no	66.78	no
125439	spore_formation	BacteriaNetⓘ	no	99.86	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Flavobacterium hydatis ATCC 29551
NCBI: GCA_002217335.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.73	yes
125438	anaerobic	anaerobicⓘ	no	96.67	yes
125438	aerobic	aerobicⓘ	yes	86.04	no
125438	spore-forming	spore-formingⓘ	no	88.40	no
125438	thermophilic	thermophileⓘ	no	97.42	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	A novel class of polymorphic toxins in Bacteroidetes.	Jana B, Salomon D, Bosis E.	Life Sci Alliance	10.26508/lsa.201900631	2020
Phylogeny	Isolation and characterization of a new Cytophaga species implicated in a work-related lung disease.	Liebert CA, Hood MA, Deck FH, Bishop K, Flaherty DK	Appl Environ Microbiol	10.1128/aem.48.5.936-943.1984	1984
	Flavobacterium frigoritolerans sp. nov. and Flavobacterium shii sp. nov., isolated from glaciers on the Tibetan Plateau.	Yang LL, Liu HC, Xin YH, Liu Q.	Int J Syst Evol Microbiol	10.1099/ijsem.0.005750	2023
Phylogeny	Flavobacterium circumlabens sp. nov. and Flavobacterium cupreum sp. nov., two psychrotrophic species isolated from Antarctic environmental samples.	Kralova S, Busse HJ, Svec P, Maslanova I, Stankova E, Bartak M, Sedlacek I	Syst Appl Microbiol	10.1016/j.syapm.2018.12.005	2018

References

#699	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2063
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#39084	; Curators of the CIP;
#43345	; 4: 145 - 174 ISBN 978 ( DOI 10.1007/978-0-387-68572-4 )
#52588	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 35201
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68369	Automatically annotated from API 20NE .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119996	Collection of Institut Pasteur ; Curators of the CIP; CIP 104741
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Flavobacterium hydatis (DSM 2063, ATCC 29551, CCUG 35201)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

Fatty acid profile

API zym

API 20NE

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002217335

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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Social Media