Chryseobacterium tenax EP105 | Type strain | DSM 16811, NCIMB 14026 | BacDiveID:5509

Strain identifier

BacDive ID: 5509

Type strain:

Species: Chryseobacterium tenax

Strain Designation: EP105

Culture col. no.: DSM 16811, NCIMB 14026

Strain history: <- L. A. O'Sullivan; EP105

NCBI tax ID(s): 191577 (species)

SI-ID 237164

NCIMB 14026, DSM 16811

Section

Chryseobacterium tenax EP105 is an aerobe, psychrophilic, Gram-negative bacterium that was isolated from epilithon-covered stones from River Taff.

Gram-negative
rod-shaped
aerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium tenax**
	Full Scientific Name (LPSN)	Chryseobacterium tenax (O'Sullivan et al. 2006) Hahnke et al. 2017

Synonym

Epilithonimonas tenax

Information on morphological and physiological properties Morphology

[Ref.: #31634]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.987

[Ref.: #31634]	Cell length	1-2.5 µm

[Ref.: #31634]	Cell width	0.6-0.7 µm

[Ref.: #31634]	Cell shape	rod-shaped

[Ref.: #31634]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %94.689

Pigment production

yes

Multimedia content

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Caption:

electron microscopic image

Intellectual property rights:

© HZI/Manfred Rohde

Information on culture and growth conditions Culture and growth conditions

Culture medium

OXOID NUTRIENT BROTH (DSMZ Medium 948)

Culture medium growth

Culture medium link

Medium recipe at MediaDive

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6610]			growth	20 °C
[Ref.: #31634]			growth	04-30 °C
[Ref.: #31634]			optimum	30 °C

[Ref.: #6610]	Temperature range	psychrophilic
[Ref.: #31634]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #31634]			optimum	7
[Ref.: #31634]			growth	7

Information on physiology and metabolism Physiology and metabolism

Oxygen tolerance

aerobe

[Ref.: #31634]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

Observation

aggregates in chains

	Metabolite utilization	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31634]		acetate ChEBI	+	carbon source
[Ref.: #31634]		dextrin ChEBI	+	carbon source
[Ref.: #31634]		esculin ChEBI	+	hydrolysis
[Ref.: #31634]		glucose ChEBI	+	carbon source
[Ref.: #31634]		glutamate ChEBI	+	carbon source
[Ref.: #31634]		glycogen ChEBI	+	carbon source
[Ref.: #31634]		maltose ChEBI	+	carbon source
[Ref.: #31634]		mannose ChEBI	+	carbon source
[Ref.: #31634]		ornithine ChEBI	+	carbon source
[Ref.: #31634]		proline ChEBI	+	carbon source
[Ref.: #31634]		serine ChEBI	+	carbon source
[Ref.: #31634]		sucrose ChEBI	+	carbon source
[Ref.: #31634]		threonine ChEBI	+	carbon source
[Ref.: #31634]		trehalose ChEBI	+	carbon source
		Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #31634]		catalase	+	1.11.1.6
[Ref.: #31634]		cytochrome oxidase	+	1.9.3.1

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6610]	Sample type/isolated from	epilithon-covered stones from River Taff
[Ref.: #6610]	Geographic location (country and/or sea, region)	Cardiff
[Ref.: #6610]	Country	United Kingdom
[Ref.: #6610]	Country ISO 3 Code	GBR
[Ref.: #6610]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Geologic
#Host	#Plants	-

What are isolation sources categories?

Global distribution of 16S sequence AF493696 (>99% sequence identity) for Epilithonimonas tenax from Microbeatlas

Aquatic Samples	303
Soil Samples	46
Animal Samples	201
Plant Samples	33
Total Samples	583

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

Biosafety level

1

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6610]	Epilithonimonas tenax strain EP105 16S ribosomal RNA gene, partial sequence	AF493696	1305	ENA	191577 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Epilithonimonas tenax DSM 16811	GCA_000428485	scaffold	GenBank	1121870 tax ID	*
[Ref.: #66792]	Epilithonimonas tenax DSM 16811	1121870.4	wgs	PATRIC	1121870 tax ID	*
[Ref.: #66792]	Epilithonimonas tenax DSM 16811	2524023241	draft	JGI IMG/M	1121870 tax ID	*

GC-content

37.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Epilithonimonas tenax DSM 16811 DSM 16811 NCBI: GCA_000428485.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Epilithonimonas tenax DSM 16811 DSM 16811 NCBI: GCA_000428485.1
[Ref.: #69480]	motile	no	90.668	yes
[Ref.: #69480]	flagellated	no	96.055	yes
[Ref.: #69480]	gram-positive	no	98.156	no
[Ref.: #69480]	anaerobic	no	99.708	no
[Ref.: #69480]	aerobic	yes	92.048	yes
[Ref.: #69480]	halophile	no	96.145	no
[Ref.: #69480]	spore-forming	no	95.645	no
[Ref.: #69480]	glucose-util	yes	87.632	yes
[Ref.: #69480]	thermophile	no	99.387	yes
[Ref.: #69480]	glucose-ferment	no	91.84	no

Availability in culture collections External links

Culture collection no.

DSM 16811, NCIMB 14026

SI-ID 237164

*

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Epilithonimonas psychrotolerans sp. nov., isolated from alpine permafrost.	Ge L, Zhao Q, Sheng H, Wu J, An L	Int J Syst Evol Microbiol	10.1099/ijsem.0.000489	2015	*
Phylogeny	Epilithonimonas ginsengisoli sp. nov., isolated from soil of a ginseng field.	Hoang VA, Kim YJ, Ponnuraj SP, Nguyen NL, Hwang KH, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.065466-0	2014	*
Phylogeny	Culturable phylogenetic diversity of the phylum 'Bacteroidetes' from river epilithon and coastal water and description of novel members of the family Flavobacteriaceae: Epilithonimonas tenax gen. nov., sp. nov. and Persicivirga xylanidelens gen. nov., sp. nov.	O'Sullivan LA, Rinna J, Humphreys G, Weightman AJ, Fry JC	Int J Syst Evol Microbiol	10.1099/ijs.0.63941-0	2006	*

References

#6610

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16811

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31634

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27917 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74994

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID237164.1 )

#27917

IJSEM 169 2006 ( DOI 10.1099/ijs.0.63941-0 , PubMed 16403883 )

* These data were automatically processed and therefore are not curated

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