Name: Gluconobacter cerinus DSM 7148
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 55

Type strain:

Species: Gluconobacter cerinus

Culture col. no.: DSM 7148, ATCC 49206, JCM 21279, CIP 104733, IAM 14721, IFO 3276, LMG 1390, NBRC 3276, NCIMB 13199

Strain history: IAM 14721 <-- IFO 3276 <-- K. Kondo 34.

NCBI tax ID(s): 38307 (species)

Other strains from Gluconobacter cerinus

G. cerinus DSM 9533, ATCC 19441, IFO 3267, ... (type strain)
G. cerinus DSM 9534, ATCC 19441, IFO 3267, ... (type strain)
G. cerinus JCM 20291, IAM 1832, LMG 1362
G. cerinus JCM 21176, ATCC 23775, IAM 14363, ...
G. cerinus JCM 21177, ATCC 23777, IAM 14364, ...

Section

Gluconobacter cerinus DSM 7148 is a mesophilic bacterium that was isolated from IFO 3276.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Rhodospirillales*
	Family	*Acetobacteraceae*
	Genus	*Gluconobacter*
	Species	**Gluconobacter cerinus**
	Full Scientific Name (PNU)	Gluconobacter cerinus (ex Asai 1935) Yamada and Akita 1984

Synonym

Gluconobacter asaii

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

negative Confidence in %99.997

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3021]

Culture medium

5% SORBITOL MEDIUM (DSMZ Medium 626)

[Ref.: #3021]

Culture medium growth

[Ref.: #3021]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #3021]

Culture medium composition

expand / minimize

[Ref.: #39082]

Culture medium

MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii

[Ref.: #39082]

Culture medium growth

[Ref.: #39082]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #3021]	growth	26 °C
[Ref.: #39082]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #3021]	Temperature range	mesophilic
[Ref.: #39082]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.99

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3021]	Sample type/isolated from	derived from IFO 3276

[Ref.: #67770]	Sample type/isolated from	Flower of Rheum undullatum
[Ref.: #67770]	Host species	Rheum undullatum
[Ref.: #67770]	Geographic location (country and/or sea, region)	Kyoto
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host	#Microbial	#Bacteria
#Condition	#Acidic	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB178415 (>99% sequence identity) for Gluconobacter from Microbeatlas

Aquatic Samples	185
Soil Samples	266
Animal Samples	1136
Plant Samples	342
Total Samples	1929

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3021]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Gluconobacter cerinus gene for 16S rRNA, strain:IFO 3276	AB063287	1390	ENA	38307 tax ID
[Ref.: #67770]	Gluconobacter cerinus gene for 16S rRNA, partial sequence, strain:NBRC 3276	AB178415	1409	ENA	38307 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Gluconobacter cerinus DSM 7148	GCA_018812125	contig	GenBank	38307 tax ID	*
[Ref.: #66792]	Gluconobacter cerinus strain DSM 7148	38307.39	wgs	PATRIC	38307 tax ID	*

[Ref.: #67770]

GC-content

55 mol%

high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Gluconobacter cerinus strain DSM 7148 PATRIC: 38307.39
[Ref.: #69480]	gram-positive	no	99.997	no
[Ref.: #69480]	spore-forming	no	99.99	yes
[Ref.: #69480]	thermophile	no	99.258	no
[Ref.: #69480]	anaerobic	no	99.555	no
[Ref.: #69480]	motile	yes	89.996	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Gluconobacter cerinus strain DSM 7148 PATRIC: 38307.39
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #3021]

Culture collection no.

DSM 7148, ATCC 49206, JCM 21279, CIP 104733, IAM 14721, IFO 3276, LMG 1390, NBRC 3276, NCIMB 13199

[Ref.: #20218]

Associated Passport(s) in StrainInfo

160576, 11744

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Identification of strains assigned to the genus Gluconobacter Asai 1935 based on the sequence and the restriction analyses of the 16S-23S rDNA internal transcribed spacer regions.	Yukphan P, Potacharoen W, Nakagawa Y, Tanticharoen M, Yamada Y	J Gen Appl Microbiol	10.2323/jgam.50.9	2004	*
Phylogeny	Gluconobacter asaii Mason and Claus 1989 is a junior subjective synonym of Gluconobacter cerinus Yamada and Akita 1984.	Katsura K, Yamada Y, Uchimura T, Komagata K	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1635	2002	*

References

#3021

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7148

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39082 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Gluconobacter cerinus strain DSM 7148

Gluconobacter cerinus strain DSM 7148

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