Gluconobacter cerinus (DSM 7148, ATCC 49206, NCIMB 13199)

Name: Gluconobacter cerinus (DSM 7148, ATCC 49206, NCIMB 13199)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 55

Type strain

Culture col. no. DSM 7148 ATCC 49206 NCIMB 13199 NBRC 3276 LMG 1390 4 more

NCBI tax ID(s) 38307

Special Collections DSMZ JCM CIP

Links

Gluconobacter cerinus DSM 7148 is an obligate aerobe, mesophilic, Gram-negative prokaryote that was isolated from IFO 3276.

Gram-negative rod-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 2938

LMG 1390,ATCC 49206,IFO 3276,ATCC 43983,CIP 104733,DSM 7148,NCIMB 13199,IAM 14721,NBRC 3276,BCRC 16011,CCRC 16011,KCTC 12295,JCM 21279

@ref 20215

Last LPSN update 2025-12-16 09:46:46

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Rhodospirillales

Family Acetobacteraceae

Genus Gluconobacter

Species Gluconobacter cerinus

Full scientific name Gluconobacter cerinus (ex Asai 1935) Yamada and Akita 1984

Synonyms (1)

Gluconobacter asaii

BacDive ID	Other strains from **Gluconobacter cerinus** (5)	Type strain
56	G. cerinus DSM 9533, ATCC 19441, IFO 3267, LMG 1368, ... (type strain)
57	G. cerinus DSM 9534, ATCC 19441, IFO 3267, LMG 1368t1 (type strain)
162849	G. cerinus JCM 20291, IAM 1832, LMG 1362
163099	G. cerinus JCM 21176, ATCC 23775, IAM 14363, LMD 29.6, ...
163100	G. cerinus JCM 21177, ATCC 23777, IAM 14364, LMG 1415, ...

Morphology

Cell morphology

@ref	Gram stain	Cell shape
118216	negative	rod-shaped
125438	negative
125439	negative

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
3021	5% SORBITOL MEDIUM (DSMZ Medium 626)	Medium recipe at MediaDive	Name: 5% SORBITOL MEDIUM (DSMZ Medium 626) Composition: D-Sorbitol 50.0 g/l Agar 15.0 g/l Peptone 10.0 g/l Yeast extract 10.0 g/l Distilled water
39082	MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii		Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g)
118216	CIP Medium 1	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
3021	positive	growth	26	mesophilic
39082	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic
118216	positive	growth	30	mesophilic
118216	negative	growth	5
118216	negative	growth	10

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
118216	obligate aerobe
125439	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125438		90.42
125439		99.4

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	-	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
118216	4853 ChEBI	esculin	-	hydrolysis
68371	4853 ChEBI	esculin	-	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	-	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
118216	17632 ChEBI	nitrate	-	reduction
118216	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	-	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite	Production
118216	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
118216	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	-	3.2.1.23	from API zym
118216	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
118216	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
118216	gelatinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
118216	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
118216	ornithine decarboxylase	-	4.1.1.17
118216	oxidase	-
68382	trypsin	+	3.4.21.4	from API zym
118216	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
118216	-	-	+	+	-	+	+	-	+	-	+	+	-	-	-	-	-	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
118216	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Microbial	#Bacteria
#Condition	#Acidic	-

Isolation

@ref	Sample type
3021	derived from IFO 3276
67770	Flower of Rheum undullatum
118216	Flower, Rheum undullatum

Taxonmaps

69479

Global distribution of 16S sequence AB178415 (>99% sequence identity) for Gluconobacter from Microbeatlas

Aquatic Samples	185
Soil Samples	266
Animal Samples	1136
Plant Samples	342
Total Samples	1929

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3021	1	Risk group (German classification) According to TRBA 466
118216	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	NCBI tax ID	Score
66792	ASM1881212v1 assembly for Gluconobacter cerinus DSM 7148	contig	GCA_018812125	38307.39	38307	54.06

Genome browser: GCA_018812125

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
67770	Gluconobacter cerinus gene for 16S rRNA, strain:IFO 3276	AB063287	1390	38307
67770	Gluconobacter cerinus gene for 16S rRNA, partial sequence, strain:NBRC 3276	AB178415	1409	38307
124043	Gluconobacter cerinus DNA, 16S-23S rRNA ITS region. strain:NBRC 3276.	AB111900	805	38307
124043	Gluconobacter cerinus DNA, 16S-23S rRNA internal transcribed spacer, strain:NBRC 3276.	AB163851	676	38307
124043	Gluconobacter cerinus partial 16S rRNA gene	X80165	1341	38307
124043	Gluconobacter cerinus strain LMG 1390 16S ribosomal RNA gene, partial sequence.	JF794017	1346	38307

GC content

@ref	GC-content (mol%)	Method
67770	55	high performance liquid chromatography (HPLC)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Gluconobacter cerinus DSM 7148
NCBI: GCA_018812125

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	yes	82.80	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.30	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Gluconobacter cerinus strain DSM 7148
PATRIC: 38307.39

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.83	no
125438	anaerobic	anaerobicⓘ	no	89.93	yes
125438	spore-forming	spore-formingⓘ	no	90.42	no
125438	aerobic	aerobicⓘ	yes	86.82	yes
125438	thermophilic	thermophileⓘ	no	97.33	no
125438	flagellated	motile2+ⓘ	yes	69.37	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenetic characterization of two novel commensal bacteria involved with innate immune homeostasis in Drosophila melanogaster.	Roh SW, Nam YD, Chang HW, Kim KH, Kim MS, Ryu JH, Kim SH, Lee WJ, Bae JW.	Appl Environ Microbiol	10.1128/aem.00301-08	2008
Enzymology	Coffea arabica L., a new host plant for Acetobacter diazotrophicus, and isolation of other nitrogen-fixing acetobacteria.	Jimenez-Salgado T, Fuentes-Ramirez LE, Tapia-Hernandez A, Mascarua-Esparza MA, Martinez-Romero E, Caballero-Mellado J.	Appl Environ Microbiol	10.1128/aem.63.9.3676-3683.1997	1997
Phylogeny	Identification of strains assigned to the genus Gluconobacter Asai 1935 based on the sequence and the restriction analyses of the 16S-23S rDNA internal transcribed spacer regions.	Yukphan P, Potacharoen W, Nakagawa Y, Tanticharoen M, Yamada Y	J Gen Appl Microbiol	10.2323/jgam.50.9	2004
Phylogeny	Gluconobacter asaii Mason and Claus 1989 is a junior subjective synonym of Gluconobacter cerinus Yamada and Akita 1984.	Katsura K, Yamada Y, Uchimura T, Komagata K	Int J Syst Evol Microbiol	10.1099/00207713-52-5-1635	2002

References

#3021	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 7148
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#39082	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#118216	Collection of Institut Pasteur ; Curators of the CIP; CIP 104733
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Gluconobacter cerinus (DSM 7148, ATCC 49206, NCIMB 13199)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

API 50CHac

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_018812125

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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