Name: Arenibacter troitsensis DSM 19835
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5483

Type strain:

Species: Arenibacter troitsensis

Culture col. no.: DSM 19835, JCM 11736, KMM 3674, NBRC 101532, CIP 108149

Strain history: M. Suzuki R3674 <-- O. I. Nedashkovskaya.

NCBI tax ID(s): 188872 (species)

Section

Arenibacter troitsensis DSM 19835 is a mesophilic bacterium that was isolated from bottom sediment sample.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Arenibacter*
	Species	**Arenibacter troitsensis**
	Full Scientific Name (PNU)	Arenibacter troitsensis Nedashkovskaya et al. 2003

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

negative Confidence in %99.989

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8342]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #8342]

Culture medium growth

[Ref.: #8342]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #8342]

Culture medium composition

expand / minimize

[Ref.: #33895]

Culture medium

Marine agar (MA)

[Ref.: #33895]

Culture medium growth

[Ref.: #33895]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8342]	growth	28 °C
[Ref.: #33895]	growth	25 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #8342]	Temperature range	mesophilic
[Ref.: #33895]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.997

[Ref.: #67770]

Observation

quinones: MK-6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8342]	Sample type/isolated from	bottom sediment sample
[Ref.: #8342]	Geographic location (country and/or sea, region)	Sea of Japan, Gulf of Peter the Great, Troitsa Bay
[Ref.: #8342]	Country	Russia
[Ref.: #8342]	Country ISO 3 Code	RUS
[Ref.: #8342]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Bottom sediment from Troitsa Bay in the Gulf of Peter the Great
[Ref.: #67770]	Geographic location (country and/or sea, region)	Sea of Japan
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB681469 (>99% sequence identity) for Arenibacter from Microbeatlas

Aquatic Samples	7063
Soil Samples	1235
Animal Samples	925
Plant Samples	168
Total Samples	9391

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8342]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8342]	Arenibacter troitsensis gene for 16S rRNA, partial sequence	AB080771	1381	ENA	188872 tax ID
[Ref.: #20218]	Arenibacter troitsensis gene for 16S rRNA, partial sequence, strain: NBRC 101532	AB681469	1449	ENA	188872 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Arenibacter troitsensis DSM 19835	GCA_900177645	scaffold	GenBank	188872 tax ID	*
[Ref.: #66792]	Arenibacter troitsensis strain DSM 19835	188872.3	wgs	PATRIC	188872 tax ID	*
[Ref.: #66792]	Arenibacter troitsensis DSM 19835	2595699007	draft	JGI IMG/M	188872 tax ID	*

[Ref.: #8342]	GC-content	40.0 mol%
[Ref.: #67770]	GC-content	40 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Arenibacter troitsensis DSM 19835 NCBI: GCA_900177645.1
[Ref.: #69480]	spore-forming	no	99.997	no
[Ref.: #69480]	gram-positive	no	99.989	yes
[Ref.: #69480]	anaerobic	no	99.567	no
[Ref.: #69480]	thermophile	no	99.644	no
[Ref.: #69480]	motile	no	74.193	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Arenibacter troitsensis DSM 19835 NCBI: GCA_900177645.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #8342]

Culture collection no.

DSM 19835, JCM 11736, KMM 3674, NBRC 101532, CIP 108149

[Ref.: #20218]

Associated Passport(s) in StrainInfo

764067, 368241, 300550, 700096

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Arenibacter hampyeongensis sp. nov., a marine bacterium isolated from a tidal flat.	Jeong SH, Jin HM, Kim JM, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.040683-0	2012	*
Phylogeny	Arenibacter troitsensis sp. nov., isolated from marine bottom sediment.	Nedashkovskaya OI, Suzuki M, Vysotskii MV, Mikhailov VV	Int J Syst Evol Microbiol	10.1099/ijs.0.02384-0	2003	*

References

#8342

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19835

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33895 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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