Aequorivita capsosiphonis (DSM 23843, JCM 15070, KCTC 22183)

Name: Aequorivita capsosiphonis (DSM 23843, JCM 15070, KCTC 22183)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5479

Type strain

Strain Designation A71

Culture col. no. DSM 23843 JCM 15070 KCTC 22183 A71

NCBI tax ID(s) 1120951 487317

Special Collections DSMZ JCM KCTC Literature strains

History DSMZ <- KCTC <- C. N. Seong, Sunchon Natl. Univ., Korea JCM <-- C. N. Seong A71. KCTC <- CN Seong, Sunchon Natl. Univ.

Links

Aequorivita capsosiphonis A71 is an aerobe, Gram-negative, rod-shaped bacterium that was isolated from seawater.

Gram-negative rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 399313

KCTC 22183,JCM 15070,DSM 23843

@ref 20215

Last LPSN update 2026-05-29 08:26:11

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Aequorivita

Species Aequorivita capsosiphonis

Full scientific name Aequorivita capsosiphonis Park et al. 2009

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29016	negative	2.5 µm	0.35 µm	rod-shaped
67771				rod-shaped
67771	negative
125438	negative				99.731
125439	negative				99.591

Pigmentation

29016

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17398	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17398	positive	growth	25
29016	positive	growth	04-40
29016	positive	optimum	25
67770	positive	growth	25
67771	positive	growth	25

Culture pH

@ref	Ability	Type	PH	PH range
29016	positive	optimum	7
29016	positive	growth	07-09	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29016	aerobe
67771	aerobe
125439	obligate aerobe	97.884

Spore formation

@ref	Spore formation	Confidence
125438		90.33
125439		99.771

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29016	NaCl	positive	growth	<10 %

Observation

29016

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29016	22653 ChEBI	asparagine	+	carbon source
29016	35391 ChEBI	aspartate	+	carbon source
29016	16947 ChEBI	citrate	+	carbon source
29016	33984 ChEBI	fucose	+	carbon source
29016	24148 ChEBI	galactonate	+	carbon source
29016	5291 ChEBI	gelatin	+	carbon source
29016	28087 ChEBI	glycogen	+	carbon source
29016	17596 ChEBI	inosine	+	carbon source
29016	17716 ChEBI	lactose	+	carbon source
29016	15792 ChEBI	malonate	+	carbon source
29016	17272 ChEBI	propionate	+	carbon source
29016	16634 ChEBI	raffinose	+	carbon source
29016	15963 ChEBI	ribitol	+	carbon source
29016	30911 ChEBI	sorbitol	+	carbon source
29016	17992 ChEBI	sucrose	+	carbon source
29016	26986 ChEBI	threonine	+	carbon source
29016	16704 ChEBI	uridine	+	carbon source

Enzymes

@ref	Value	Activity	Ec
29016	acid phosphatase	+	3.1.3.2
29016	alkaline phosphatase	+	3.1.3.1
29016	catalase	+	1.11.1.6

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Host species
17398	seawater	South Sea, Gwangyang Bay	Republic of Korea	KOR	Asia
67770	Green alga Capsosiphon fulvescens		Republic of Korea	KOR	Asia	Capsosiphon fulvescens
67771	From seawater	Gwangyang Bay	Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU290153 (>99% sequence identity) for Aequorivita capsosiphonis subclade from Microbeatlas

Aquatic Samples	361
Soil Samples	150
Animal Samples	649
Plant Samples	26
Total Samples	1186

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17398	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM42912v1 assembly for Aequorivita capsosiphonis DSM 23843	scaffold	GCA_000429125	1120951.3	2524023070	1120951	72.12

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17398	Aequorivita capsosiphonis strain A71 16S ribosomal RNA gene, partial sequence	EU290153	1412		487317

GC content

@ref	GC-content (mol%)	Method
29016	36.9
67770	36.9	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM42912v1 assembly for Aequorivita capsosiphonis DSM 23843
NCBI: GCA_000429125

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.88	no
125439	gram_stain	BacteriaNetⓘ	negative	99.59	no
125439	motility	BacteriaNetⓘ	no	86.06	no
125439	spore_formation	BacteriaNetⓘ	no	99.77	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Aequorivita capsosiphonis DSM 23843
PATRIC: 1120951.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.73	yes
125438	anaerobic	anaerobicⓘ	no	97.36	yes
125438	spore-forming	spore-formingⓘ	no	90.33	no
125438	aerobic	aerobicⓘ	yes	87.27	yes
125438	thermophilic	thermophileⓘ	no	94.68	yes
125438	flagellated	motile2+ⓘ	no	88.40	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aequorivita viscosa sp. nov., isolated from an intertidal zone, and emended descriptions of Aequorivita antarctica and Aequorivita capsosiphonis.	Liu JJ, Zhang XQ, Pan J, Sun C, Zhang Y, Li CQ, Zhu XF, Wu M	Int J Syst Evol Microbiol	10.1099/ijs.0.049635-0	2013
Phylogeny	Aequorivita capsosiphonis sp. nov., isolated from the green alga Capsosiphon fulvescens, and emended description of the genus Aequorivita.	Park SC, Baik KS, Kim MS, Kim SS, Kim SR, Oh MJ, Kim D, Bang BH, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.004119-0	2009

References

#17398	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23843
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25446	IJSEM 724 2009 ( DOI 10.1099/ijs.0.004119-0 , PubMed 19329596 )
#29016	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25446
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Aequorivita capsosiphonis (DSM 23843, JCM 15070, KCTC 22183)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000429125

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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