Reichenbachiella faecimaris (DSM 26133, JCM 16588, KACC 14523)

Cell morphology

Multimedia

• @ref:	18166
  multimedia content:	DSM_26133.jpg
  multimedia.multimedia content:	https://www.dsmz.de/microorganisms/photos/DSM_26133.jpg
  intellectual property rights:	© Leibniz-Institut DSMZ
  manual_annotation:	1

Culture medium

@ref	Name	Growth	Medium link	Composition
18166	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

Oxygen tolerance

Spore formation

Observation

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions	external links
66794	cellulose degradation	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	adipate degradation	100	2 of 2
66794	octane oxidation	100	3 of 3
66794	ethanol fermentation	100	2 of 2
66794	vitamin K metabolism	100	5 of 5
66794	starch degradation	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	biotin biosynthesis	100	4 of 4
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	kanosamine biosynthesis II	100	2 of 2
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	coenzyme A metabolism	100	4 of 4
66794	sulfopterin metabolism	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	methylglyoxal degradation	100	5 of 5
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	threonine metabolism	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	serine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	tetrahydrofolate metabolism	85.71	12 of 14
66794	photosynthesis	85.71	12 of 14
66794	phenylalanine metabolism	84.62	11 of 13
66794	lipid metabolism	83.87	26 of 31
66794	NAD metabolism	83.33	15 of 18
66794	histidine metabolism	82.76	24 of 29
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	tryptophan metabolism	81.58	31 of 38
66794	glycogen metabolism	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	heme metabolism	78.57	11 of 14
66794	d-mannose degradation	77.78	7 of 9
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	leucine metabolism	76.92	10 of 13
66794	purine metabolism	76.6	72 of 94
66794	glycolysis	76.47	13 of 17
66794	butanoate fermentation	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	glycogen biosynthesis	75	3 of 4
66794	lysine metabolism	73.81	31 of 42
66794	pentose phosphate pathway	72.73	8 of 11
66794	citric acid cycle	71.43	10 of 14
66794	propanol degradation	71.43	5 of 7
66794	myo-inositol biosynthesis	70	7 of 10
66794	propionate fermentation	70	7 of 10
66794	coenzyme M biosynthesis	70	7 of 10
66794	vitamin B1 metabolism	69.23	9 of 13
66794	pyrimidine metabolism	68.89	31 of 45
66794	methane metabolism	66.67	2 of 3
66794	lipid A biosynthesis	66.67	6 of 9
66794	flavin biosynthesis	66.67	10 of 15
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	acetyl CoA biosynthesis	66.67	2 of 3
66794	cyanate degradation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	CO2 fixation in Crenarchaeota	66.67	6 of 9
66794	alanine metabolism	65.52	19 of 29
66794	glutathione metabolism	64.29	9 of 14
66794	tyrosine metabolism	64.29	9 of 14
66794	proline metabolism	63.64	7 of 11
66794	vitamin B6 metabolism	63.64	7 of 11
66794	non-pathway related	63.16	24 of 38
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	arginine metabolism	62.5	15 of 24
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	factor 420 biosynthesis	60	3 of 5
66794	methionine metabolism	57.69	15 of 26
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	cysteine metabolism	55.56	10 of 18
66794	d-xylose degradation	54.55	6 of 11
66794	metabolism of disaccharids	54.55	6 of 11
66794	degradation of sugar acids	52	13 of 25
66794	ascorbate metabolism	50	11 of 22
66794	CMP-KDO biosynthesis	50	2 of 4
66794	ketogluconate metabolism	50	4 of 8
66794	cyclohexanol degradation	50	2 of 4
66794	phenylmercury acetate degradation	50	1 of 2
66794	degradation of aromatic, nitrogen containing compounds	50	6 of 12
66794	toluene degradation	50	2 of 4
66794	urea cycle	46.15	6 of 13
66794	phosphatidylethanolamine bioynthesis	46.15	6 of 13
66794	phenylpropanoid biosynthesis	46.15	6 of 13
66794	allantoin degradation	44.44	4 of 9
66794	nitrate assimilation	44.44	4 of 9
66794	arachidonic acid metabolism	44.44	8 of 18
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	oxidative phosphorylation	42.86	39 of 91
66794	D-cycloserine biosynthesis	40	2 of 5
66794	gallate degradation	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	polyamine pathway	39.13	9 of 23
66794	sulfate reduction	38.46	5 of 13
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	vitamin B12 metabolism	35.29	12 of 34
66794	phenol degradation	35	7 of 20
66794	pantothenate biosynthesis	33.33	2 of 6
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	degradation of hexoses	33.33	6 of 18
66794	degradation of pentoses	32.14	9 of 28
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	carnitine metabolism	25	2 of 8
66794	degradation of sugar alcohols	25	4 of 16
66794	catecholamine biosynthesis	25	1 of 4
66794	carotenoid biosynthesis	22.73	5 of 22

Isolation source categories

Isolation

Taxonmaps

69479

Global distribution of 16S sequence GU143096 (>99% sequence identity) for Reichenbachiella faecimaris subclade from Microbeatlas

Aquatic Samples	1214
Soil Samples	130
Animal Samples	2065
Plant Samples	30
Total Samples	3439

Risk assessment

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2619619645 annotated assembly for Reichenbachiella faecimaris DSM 26133	scaffold	GCA_900176375	692418.3	2619619645	692418	77.42

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
18166	Reichenbachiella faecimaris strain PCP11 16S ribosomal RNA gene, partial sequence	GU143096	1429		692418

GC content

Predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Reichenbachiella versicolor sp. nov., isolated from red alga.	Shi MJ, Wang C, Liu ZY, Jiang LX, Du ZJ	Int J Syst Evol Microbiol	10.1099/ijsem.0.003023	2018
Phylogeny	Reichenbachiella faecimaris sp. nov., isolated from a tidal flat, and emended descriptions of the genus Reichenbachiella and Reichenbachiella agariperforans.	Cha IT, Oh YS, Park SJ, Park BJ, Lee JK, Lim CS, Park AR, Yoo JS, Lee DH, Rhee SK, Roh DH	Int J Syst Evol Microbiol	10.1099/ijs.0.026849-0	2010