Name: Thermonema rossianum NR-27
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5469

Type strain:

Species: Thermonema rossianum

Strain Designation: NR-27

Culture col. no.: DSM 10300

Strain history: <- M.S. Da Costa, University of Coimbra

NCBI tax ID(s): 1313301 (strain), 55505 (species)

SI-ID 48799

DSM 10300

Special Collections

DSMZ

Other strains from Thermonema rossianum

Section

Thermonema rossianum NR-27 is a Gram-negative bacterium that was isolated from saline hot springs.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Thermonemataceae*
	Genus	*Thermonema*
	Species	**Thermonema rossianum**
	Full Scientific Name (LPSN)	Thermonema rossianum Nobre et al. 1997

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %98.241

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3889]

Culture medium

THERMUS 162 MEDIUM (DSMZ Medium 878)

[Ref.: #3889]

Culture medium growth

[Ref.: #3889]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3889]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3889]			growth	50 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.468
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3889]	Sample type/isolated from	saline hot springs
[Ref.: #3889]	Geographic location (country and/or sea, region)	Bay of Naples
[Ref.: #3889]	Country	Italy
[Ref.: #3889]	Country ISO 3 Code	ITA
[Ref.: #3889]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Saline	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y08956 (>99% sequence identity) for Thermonema rossianum subclade from Microbeatlas

Aquatic Samples	23
Soil Samples	2
Animal Samples	1
Plant Samples
Total Samples	26

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3889]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3889]	T.rossianum 16S rRNA gene (strain NR-27T)	Y08956	1465	GenBank ENA	55505 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermonema rossianum DSM 10300	GCA_000426825	scaffold	GenBank ENA	1313301 tax ID	*
[Ref.: #66792]	Thermonema rossianum DSM 10300	1313301.3	wgs	PATRIC	1313301 tax ID	*
[Ref.: #66792]	Thermonema rossianum DSM 10300	2523533595	draft	JGI IMG/M	1313301 tax ID	*

[Ref.: #3889]

GC-content

48.8 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermonema rossianum DSM 10300 DSM 10300 NCBI: GCA_000426825.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermonema rossianum DSM 10300 DSM 10300 NCBI: GCA_000426825.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	98.241	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.053	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	78.563	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.468	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	54.896	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	87.5	no

Availability in culture collections External links

[Ref.: #3889]

Culture collection no.

DSM 10300

[Ref.: #74957]

SI-ID 48799

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermonema rossianum sp. nov., a new thermophilic and slightly halophilic species from saline hot springs in Naples, Italy.	Tenreiro S, Nobre MF, Rainey FA, Miguel C, da Costa MS	Int J Syst Bacteriol	10.1099/00207713-47-1-122	1997	*

References

#3889

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10300

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74957

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48799.1 )

* These data were automatically processed and therefore are not curated

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Thermonema rossianum DSM 10300 DSM 10300

Thermonema rossianum DSM 10300 DSM 10300

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