Name: Thermonema rossianum NR-27
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5469

Type strain:

Species: Thermonema rossianum

Strain Designation: NR-27

Culture col. no.: DSM 10300

Strain history: <- M.S. Da Costa, University of Coimbra

NCBI tax ID(s): 1313301 (strain), 55505 (species)

SI-ID 48799

DSM 10300

Other strains from Thermonema rossianum

T. rossianum SC-1, DSM 10298
T. rossianum AG3-1, DSM 10299

Section

Thermonema rossianum NR-27 is a thermophilic, Gram-negative bacterium that was isolated from saline hot springs.

Gram-negative
thermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Cytophagia*
	Order	*Cytophagales*
	Family	*Thermonemataceae*
	Genus	*Thermonema*
	Species	**Thermonema rossianum**
	Full Scientific Name (LPSN)	Thermonema rossianum Nobre et al. 1997

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3889]

Culture medium

THERMUS 162 MEDIUM (DSMZ Medium 878)

[Ref.: #3889]

Culture medium growth

[Ref.: #3889]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3889]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3889]			growth	50 °C

[Ref.: #3889]

Temperature range

thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3889]	Sample type/isolated from	saline hot springs
[Ref.: #3889]	Geographic location (country and/or sea, region)	Bay of Naples
[Ref.: #3889]	Country	Italy
[Ref.: #3889]	Country ISO 3 Code	ITA
[Ref.: #3889]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Condition	#Saline	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence Y08956 (>99% sequence identity) for Thermonema rossianum subclade from Microbeatlas

Aquatic Samples	23
Soil Samples	2
Animal Samples	1
Plant Samples
Total Samples	26

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3889]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3889]	T.rossianum 16S rRNA gene (strain NR-27T)	Y08956	1465	ENA	55505 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermonema rossianum DSM 10300	GCA_000426825	scaffold	GenBank	1313301 tax ID	*
[Ref.: #66792]	Thermonema rossianum DSM 10300	1313301.3	wgs	PATRIC	1313301 tax ID	*
[Ref.: #66792]	Thermonema rossianum DSM 10300	2523533595	draft	JGI IMG/M	1313301 tax ID	*

[Ref.: #3889]

GC-content

48.8 mol%

sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermonema rossianum DSM 10300 DSM 10300 NCBI: GCA_000426825.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermonema rossianum DSM 10300 DSM 10300 NCBI: GCA_000426825.1
[Ref.: #69480]	motile	no	88.42	no
[Ref.: #69480]	flagellated	no	95.773	no
[Ref.: #69480]	gram-positive	no	98.838	no
[Ref.: #69480]	anaerobic	no	97.028	no
[Ref.: #69480]	halophile	no	71.567	no
[Ref.: #69480]	spore-forming	no	94.594	no
[Ref.: #69480]	glucose-util	yes	66.968	no
[Ref.: #69480]	aerobic	yes	75.19	no
[Ref.: #69480]	thermophile	yes	72.251	yes
[Ref.: #69480]	glucose-ferment	no	90.296	no

Availability in culture collections External links

[Ref.: #3889]

Culture collection no.

DSM 10300

[Ref.: #74957]

SI-ID 48799

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Thermonema rossianum sp. nov., a new thermophilic and slightly halophilic species from saline hot springs in Naples, Italy.	Tenreiro S, Nobre MF, Rainey FA, Miguel C, da Costa MS	Int J Syst Bacteriol	10.1099/00207713-47-1-122	1997	*

References

#3889

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 10300

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74957

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID48799.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Thermonema rossianum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Thermonema rossianum DSM 10300 DSM 10300

Thermonema rossianum DSM 10300 DSM 10300

Change proposal

Change proposal