Name: Eubacterium ramulus DSM 15684
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5439

Type strain:

Species: Eubacterium ramulus

Culture col. no.: DSM 15684, ATCC 29099, DSM 3995, KCTC 5972, VPI C6-27

Strain history: <- ATCC <- L. V. Holdeman

NCBI tax ID(s): 1256908 (strain), 39490 (species)

SI-ID 39352

ATCC 29099, DSM 3995, DSM 15684, VTT E-052782

Other strains from Eubacterium ramulus

E. ramulus WK1, DSM 16296
E. ramulus JCM 31335

Section

Eubacterium ramulus DSM 15684 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human feces.

Gram-positive
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Eubacteriaceae*
	Genus	*Eubacterium*
	Species	**Eubacterium ramulus**
	Full Scientific Name (LPSN)	Eubacterium ramulus Moore et al. 1976 (Approved Lists 1980)

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6044]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #6044]

Culture medium growth

[Ref.: #6044]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6044]

Culture medium composition

expand / minimize

[Ref.: #6044]

Culture medium

SCHAEDLER BROTH (ROTH; 5772) (DSMZ Medium 1669)

[Ref.: #6044]

Culture medium growth

[Ref.: #6044]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6044]

Culture medium composition

expand / minimize

[Ref.: #6044]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #6044]

Culture medium growth

[Ref.: #6044]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6044]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6044]			growth	37 °C

[Ref.: #6044]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6044]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69480]

Ability of spore formation

no Confidence in %98.807

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6044]	Sample type/isolated from	human feces
[Ref.: #6044]	Country	USA
[Ref.: #6044]	Country ISO 3 Code	USA
[Ref.: #6044]	Continent	North America
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6044]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Eubacterium ramulus ATCC 29099 16S ribosomal RNA gene, partial sequence	L34623	1474	ENA	1256908 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Eubacterium ramulus ATCC 29099	GCA_000469345	scaffold	GenBank	1256908 tax ID	*
[Ref.: #66792]	Eubacterium ramulus ATCC 29099	1256908.3	wgs	PATRIC	1256908 tax ID	*
[Ref.: #66792]	Eubacterium ramulus ATCC 29099	1256908.6	wgs	PATRIC	1256908 tax ID	*
[Ref.: #66792]	Eubacterium ramulus VPI C6-27, ATCC 29099	2597490300	draft	JGI IMG/M	1256908 tax ID	*

[Ref.: #6044]

GC-content

39 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Eubacterium ramulus ATCC 29099 PATRIC: 1256908.6
[Ref.: #69481]	spore-forming	yes	74	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Eubacterium ramulus ATCC 29099 ATCC 29099 NCBI: GCA_000469345.1
[Ref.: #69480]	motile	no	92.171	no
[Ref.: #69480]	flagellated	no	96.917	no
[Ref.: #69480]	gram-positive	yes	79.552	no
[Ref.: #69480]	anaerobic	yes	99.428	yes
[Ref.: #69480]	aerobic	no	97.652	no
[Ref.: #69480]	halophile	no	81.088	no
[Ref.: #69480]	spore-forming	no	61.244	no
[Ref.: #69480]	thermophile	no	95.436	yes
[Ref.: #69480]	glucose-util	yes	89.956	no
[Ref.: #69480]	glucose-ferment	yes	58.563	no

Availability in culture collections External links

[Ref.: #6044]

Culture collection no.

DSM 15684, ATCC 29099, DSM 3995, KCTC 5972, VPI C6-27

[Ref.: #74927]

SI-ID 39352

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Characterization of an O-desmethylangolensin-producing bacterium isolated from human feces.	Yokoyama S, Niwa T, Osawa T, Suzuki T	Arch Microbiol	10.1007/s00203-009-0524-5	2009	*
	Polyethylene Glycol Loxenatide Injection (GLP-1) Protects Vascular Endothelial Cell Function in Middle-Aged and Elderly Patients With Type 2 Diabetes by Regulating Gut Microbiota.	Chen F, He L, Li J, Yang S, Zhang B, Zhu D, Wu Z, Zhang S, Hou D, Ouyang C, Yi J, Xiao C, Hou K	Front Mol Biosci	10.3389/fmolb.2022.879294	2022	*

References

#6044

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15684

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74927

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID39352.1 )

* These data were automatically processed and therefore are not curated

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Eubacterium ramulus ATCC 29099

Eubacterium ramulus ATCC 29099 ATCC 29099

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