Faecalitalea cylindroides (DSM 3983, ATCC 27803, JCM 10261)

Name: Faecalitalea cylindroides (DSM 3983, ATCC 27803, JCM 10261)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5423

Type strain

Culture col. no. DSM 3983 ATCC 27803 JCM 10261 VPI 3654 Virginia Polytechnic Institute 3654

NCBI tax ID(s) 649755 39483

Special Collections DSMZ JCM

History <- ATCC <- E.P. Cato, VPI 3654 DSM 3983 <-- ATCC 27803 <-- E. P. Cato VPI 3654.

Links

Faecalitalea cylindroides DSM 3983 is an anaerobe bacterium that was isolated from clinically normal human faeces.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 42352

ATCC 27803,ATCC 49209,DSM 20642,DSM 3983,JCM 10261,JCM 10262,CCUG39905,LMG 28909

@ref 20215

Last LPSN update 2026-02-09 11:18:57

Domain Bacteria

Phylum Bacillota

Class Erysipelotrichia

Order Erysipelotrichales

Family Erysipelotrichaceae

Genus Faecalitalea

Species Faecalitalea cylindroides

Full scientific name Faecalitalea cylindroides (Rocchi 1908) De Maesschalck et al. 2014

Synonyms (3)

"Bacteroides cylindroides"
"Bacterium cylindroides"
Eubacterium cylindroides

BacDive ID	Other strains from **Faecalitalea cylindroides** (2)	Type strain
165613	F. cylindroides JCM 7786, ATCC 27805, VPI 3696
165614	F. cylindroides JCM 7788, ATCC 27804, VPI 3651

Morphology

Cell morphology

@ref	Motility	Confidence
125438		93

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1541	CHOPPED MEAT MEDIUM (DSMZ Medium 78)		Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78; with strain-specific modifications) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 0.0001 g/l NaOH (optional) Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
1541	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

1541

Oxygen toleranceanaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68380	29016 ChEBI	arginine	-	hydrolysis	from API rID32A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68380	arginine dihydrolase	-	3.5.3.6	from API rID32A
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucine arylamidase	-	3.4.11.1	from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68380	urease	-	3.5.1.5	from API rID32A

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
1541	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-
1541	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Infection	#Medical environment	#Clinic
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type
1541	clinically normal human faeces
67770	Human feces

Taxonmaps

69479

Global distribution of 16S sequence AB558487 (>99% sequence identity) for Faecalitalea cylindroides subclade from Microbeatlas

Aquatic Samples	2385
Soil Samples	248
Animal Samples	26002
Plant Samples	168
Total Samples	28803

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1541	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM46930v1 assembly for Faecalitalea cylindroides ATCC 27803	scaffold	GCA_000469305	649755.5	2558860279	649755	44.37
66792	[Eubacterium] cylindroides ATCC 27803	contig		649755.3		649755	41.8

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Eubacterium cylindroides 16S ribosomal RNA gene, partial sequence	L34617	1490		649755
1541	Eubacterium cylindroides gene for 16S ribosomal RNA, partial sequence, strain: JCM 10261	AB558487	1504		39483

GC content

@ref	GC-content (mol%)	Method
1541	31.0	thermal denaturation, midpoint method (Tm)
67770	31	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Faecalitalea cylindroides ATCC 27803
NCBI: GCA_000469305

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	55.00	no
125439	motility	BacteriaNetⓘ	no	55.60	no
125439	gram_stain	BacteriaNetⓘ	positive	78.40	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	80.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Faecalitalea cylindroides ATCC 27803 ATCC 27803
NCBI: GCA_000469305.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	82.48	no
125438	anaerobic	anaerobicⓘ	yes	81.28	no
125438	aerobic	aerobicⓘ	no	98.71	no
125438	spore-forming	spore-formingⓘ	no	75.56	no
125438	thermophilic	thermophileⓘ	no	94.96	yes
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Whole genome sequencing of "Faecalibaculum rodentium" ALO17, isolated from C57BL/6J laboratory mouse feces.	Lim S, Chang DH, Ahn S, Kim BC.	Gut Pathog	10.1186/s13099-016-0087-3	2016
Enzymology	An exploration of Prevotella-rich microbiomes in HIV and men who have sex with men.	Armstrong AJS, Shaffer M, Nusbacher NM, Griesmer C, Fiorillo S, Schneider JM, Preston Neff C, Li SX, Fontenot AP, Campbell T, Palmer BE, Lozupone CA.	Microbiome	10.1186/s40168-018-0580-7	2018
Genetics	Genome sequence and description of Traorella massiliensis gen. nov., sp. nov., a new bacterial genus isolated from human left colon.	Bonnet M, Mailhe M, Ricaboni D, Labas N, Richez M, Vitton V, Benezech A, Fournier PE, Million M, Raoult D, Khelaifia S.	New Microbes New Infect	10.1016/j.nmni.2019.100520	2019
	Description of a new member of the family Erysipelotrichaceae: Dakotella fusiforme gen. nov., sp. nov., isolated from healthy human feces.	Ghimire S, Wongkuna S, Scaria J.	PeerJ	10.7717/peerj.10071	2020
Phylogeny	Faecalibaculum rodentium gen. nov., sp. nov., isolated from the faeces of a laboratory mouse.	Chang DH, Rhee MS, Ahn S, Bang BH, Oh JE, Lee HK, Kim BC	Antonie Van Leeuwenhoek	10.1007/s10482-015-0583-3	2015
Phylogeny	Faecalicoccus acidiformans gen. nov., sp. nov., isolated from the chicken caecum, and reclassification of Streptococcus pleomorphus (Barnes et al. 1977), Eubacterium biforme (Eggerth 1935) and Eubacterium cylindroides (Cato et al. 1974) as Faecalicoccus pleomorphus comb. nov., Holdemanella biformis gen. nov., comb. nov. and Faecalitalea cylindroides gen. nov., comb. nov., respectively, within the family Erysipelotrichaceae.	De Maesschalck C, Van Immerseel F, Eeckhaut V, De Baere S, Cnockaert M, Croubels S, Haesebrouck F, Ducatelle R, Vandamme P	Int J Syst Evol Microbiol	10.1099/ijs.0.064626-0	2014

References

#1541	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3983
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Faecalitalea cylindroides (DSM 3983, ATCC 27803, JCM 10261)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000469305

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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