Name: Clostridium budayi ECI
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5419

Type strain:

Species: Clostridium budayi

Strain Designation: ECI

Culture col. no.: DSM 3981, ATCC 25541, VPI 0250, JCM 9989

Strain history: STAFF 1014 <-- ATCC 25541 <-- L. V. Holdeman VPI 0250 <-- A. Prévot ECI.

NCBI tax ID(s): 83338 (species)

SI-ID 38587

ATCC 25541, DSM 3981, JCM 9989

Section

Clostridium budayi ECI is an anaerobe, mesophilic bacterium that was isolated from Pond water.

anaerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Clostridiaceae*
	Genus	*Clostridium*
	Species	**Clostridium budayi**
	Full Scientific Name (LPSN)	Clostridium budayi (Le Blaye and Guggenheim 1914) Bernard et al. 2018

	Synonym	Eubacterium budayi
	Synonym	"Bacterium* budayi"*

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1539]

Culture medium

AMB MEDIUM (DSMZ Medium 455)

[Ref.: #1539]

Culture medium growth

[Ref.: #1539]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1539]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1539]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #1539]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #1539]

Oxygen tolerance

anaerobe

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1539]	Sample type/isolated from	Pond water

[Ref.: #67770]	Sample type/isolated from	Pond water
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Pond (small)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC383839 (>99% sequence identity) for Clostridium baratii from Microbeatlas

Aquatic Samples	927
Soil Samples	585
Animal Samples	10123
Plant Samples	218
Total Samples	11853

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1539]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	[Eubacterium] budayi JCM 9989 gene for 16S ribosomal RNA, partial sequence	LC383839	1453	ENA	83338 tax ID
[Ref.: #20218]	Eubacterium budayi gene for 16S rRNA, partial sequence	AB018183	1472	ENA	83338 tax ID	*

Availability in culture collections External links

[Ref.: #1539]

Culture collection no.

DSM 3981, ATCC 25541, VPI 0250, JCM 9989

[Ref.: #74908]

SI-ID 38587

References

#1539

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3981

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#74908

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID38587.1 )

* These data were automatically processed and therefore are not curated

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