Acetobacterium fimetarium (DSM 8238, Z-4290, Z-M13)

Name: Acetobacterium fimetarium (DSM 8238, Z-4290, Z-M13)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5408

Type strain

Strain Designation Z-4290, Z-M13

Culture col. no. DSM 8238 Z-4290 Z-M13

NCBI tax ID(s) 52691

Special Collections DSMZ

History DSMZ <- A. N. Nozhevnikova; Z-M13

Links

Acetobacterium fimetarium Z-4290 is an anaerobe bacterium that was isolated from cattle manure.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 43183

ATCC 51795,DSM 8238

@ref 20215

Last LPSN update 2026-05-29 08:26:10

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Eubacteriaceae

Genus Acetobacterium

Species Acetobacterium fimetarium

Full scientific name Acetobacterium fimetarium Kotsyurbenko et al. 1997

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
3215	ACETOBACTERIUM TUNDRAE MEDIUM (DSMZ Medium 900)		Medium recipe at MediaDive	Name: ACETOBACTERIUM TUNDRAE MEDIUM (DSMZ Medium 900; with strain-specific modifications) Composition: Na-(DL)-lactate 3.99202 g/l Na2CO3 1.49701 g/l Yeast extract 0.998004 g/l MgCl2 x 6 H2O 0.518962 g/l NH4Cl 0.329341 g/l KH2PO4 0.329341 g/l KCl 0.329341 g/l L-Cysteine HCl x H2O 0.299401 g/l CaCl2 x 2 H2O 0.299401 g/l Na2S x 9 H2O 0.299401 g/l HCl 0.00249501 g/l FeCl2 x 4 H2O 0.00149701 g/l Sodium resazurin 0.000499002 g/l Pyridoxine hydrochloride 0.000299401 g/l Nicotinic acid 0.000199601 g/l Thiamine-HCl x 2 H2O 0.000199601 g/l CoCl2 x 6 H2O 0.000189621 g/l Calcium pantothenate 9.98004e-05 g/l Vitamin B12 9.98004e-05 g/l MnCl2 x 4 H2O 9.98004e-05 g/l p-Aminobenzoic acid 7.98403e-05 g/l ZnCl2 6.98603e-05 g/l Na2MoO4 x 2 H2O 3.59281e-05 g/l NiCl2 x 6 H2O 2.39521e-05 g/l D-(+)-biotin 1.99601e-05 g/l H3BO3 5.98802e-06 g/l CuCl2 x 2 H2O 1.99601e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
3215	positive	growth	30

Physiology and metabolism

Oxygen tolerance

3215

Oxygen toleranceanaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
3215	cattle manure	near Moscow	Russia	RUS	Europe

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
3215	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM1428447v1 assembly for Acetobacterium fimetarium DSM 8238	contig	GCA_014284475	52691.4	3001528626	52691	61.88

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
3215	A.fimetarium 16S rRNA gene	X96959	1469		52691

GC content

3215

GC-content (mol%)45.6

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1428447v1 assembly for Acetobacterium fimetarium DSM 8238
NCBI: GCA_014284475

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate anaerobe	74.51	no
125439	gram_stain	BacteriaNetⓘ	variable	69.56	no
125439	motility	BacteriaNetⓘ	yes	57.02	no
125439	spore_formation	BacteriaNetⓘ	yes	51.22	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Using gas mixtures of CO, CO₂ and H₂ as microbial substrates: the do's and don'ts of successful technology transfer from laboratory to production scale.	Takors R, Kopf M, Mampel J, Bluemke W, Blombach B, Eikmanns B, Bengelsdorf FR, Weuster-Botz D, Durre P.	Microb Biotechnol	10.1111/1751-7915.13270	2018

References

#3215	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8238
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Acetobacterium fimetarium (DSM 8238, Z-4290, Z-M13)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_014284475

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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