Name: Acetobacterium paludosum Z-4092
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5407

Type strain:

Species: Acetobacterium paludosum

Strain Designation: Z-4092, Z-B12

Culture col. no.: DSM 8237

Strain history: <- A. N. Nozhevnikova; Z-B12

NCBI tax ID(s): 52693 (species)

SI-ID 45320

ATCC 51793, DSM 8237

Section

Acetobacterium paludosum Z-4092 is an anaerobe, psychrophilic, Gram-positive bacterium that was isolated from bog sediment.

Gram-positive
anaerobe
psychrophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Clostridia*
	Order	*Eubacteriales*
	Family	*Eubacteriaceae*
	Genus	*Acetobacterium*
	Species	**Acetobacterium paludosum**
	Full Scientific Name (LPSN)	Acetobacterium paludosum Kotsyurbenko et al. 1997

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	positive Confidence in %99.719

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3214]

Culture medium

ACETOBACTERIUM FIMETARIUM MEDIUM (DSMZ Medium 614)

[Ref.: #3214]

Culture medium growth

[Ref.: #3214]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3214]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #3214]			growth	20 °C

[Ref.: #3214]

Temperature range

psychrophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #3214]	Oxygen tolerance	anaerobe
[Ref.: #69480]	Oxygen tolerance	anaerobe Confidence in %100

[Ref.: #69480]

Ability of spore formation

no Confidence in %99.648

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3214]	Sample type/isolated from	bog sediment
[Ref.: #3214]	Geographic location (country and/or sea, region)	near Moscow
[Ref.: #3214]	Country	Russia
[Ref.: #3214]	Country ISO 3 Code	RUS
[Ref.: #3214]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Wetland (Swamp)
#Environmental	#Terrestrial	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X96958 (>99% sequence identity) for Acetobacterium paludosum from Microbeatlas

Aquatic Samples	49
Soil Samples	7
Animal Samples	7
Plant Samples
Total Samples	63

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3214]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3214]	A.paludosum 16S rRNA gene	X96958	1459	ENA	52693 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Acetobacterium paludosum DSM 8237	GCA_008086595	contig	GenBank	52693 tax ID	*
[Ref.: #66792]	Acetobacterium paludosum strain DSM 8237	52693.4	wgs	PATRIC	52693 tax ID	*

[Ref.: #3214]

GC-content

41.7 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Acetobacterium paludosum strain DSM 8237 PATRIC: 52693.4
[Ref.: #69481]	spore-forming	no	65	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Acetobacterium paludosum strain DSM 8237 PATRIC: 52693.4
[Ref.: #69480]	gram-positive	yes	68.027	no
[Ref.: #69480]	anaerobic	yes	99.229	yes
[Ref.: #69480]	halophile	no	95.284	no
[Ref.: #69480]	spore-forming	yes	53.834	no
[Ref.: #69480]	glucose-util	yes	71.94	no
[Ref.: #69480]	thermophile	no	98.27	no
[Ref.: #69480]	motile	yes	74.775	no
[Ref.: #69480]	aerobic	no	98.752	yes
[Ref.: #69480]	flagellated	no	59.49	no
[Ref.: #69480]	glucose-ferment	yes	52.939	no

Availability in culture collections External links

[Ref.: #3214]

Culture collection no.

DSM 8237

[Ref.: #74897]

SI-ID 45320

Literature:

Topic	Title	Authors	Journal	DOI	Year
Genetics	Insights into the genome structure of four acetogenic bacteria with specific reference to the Wood-Ljungdahl pathway.	Esposito A, Tamburini S, Triboli L, Ambrosino L, Chiusano ML, Jousson O	Microbiologyopen	10.1002/mbo3.938	2019	*

References

#3214

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8237

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74897

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45320.1 )

* These data were automatically processed and therefore are not curated

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Acetobacterium paludosum strain DSM 8237

Acetobacterium paludosum strain DSM 8237

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