Acetobacterium carbinolicum (DSM 2925, WoProp 1)

Name: Acetobacterium carbinolicum (DSM 2925, WoProp 1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5399

Type strain

Culture col. no. DSM 2925 WoProp 1

NCBI tax ID(s) 52690

Special Collections DSMZ

History <- B. Eichler, Universität Konstanz, Fakultät für Biologie, Konstanz, Germany; WoProp1 <- B. Eichler and B. Schink {1982}

Links

Acetobacterium carbinolicum DSM 2925 is an anaerobe bacterium that was isolated from anoxic freshwater mud.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 47673

DSM 2925

@ref 20215

Last LPSN update 2026-02-09 11:18:57

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Eubacteriaceae

Genus Acetobacterium

Species Acetobacterium carbinolicum

Full scientific name Acetobacterium carbinolicum Eichler and Schink 1985

BacDive ID	Other strains from **Acetobacterium carbinolicum** (1)	Type strain
24007	A. carbinolicum SyrA5, DSM 16427, ATCC BAA-990

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1251	DESULFOFARCIMEN MEDIUM (DSMZ Medium 124)		Medium recipe at MediaDive	Name: DESULFOFARCIMEN MEDIUM (DSMZ Medium 124; with strain-specific modifications) Composition: NaHCO3 4.48654 g/l Na2SO4 2.83151 g/l NaCl 1.1665 g/l Ethanol absolute 0.997009 g/l Yeast extract 0.997009 g/l Na2S x 9 H2O 0.398804 g/l MgCl2 x 6 H2O 0.398804 g/l KCl 0.299103 g/l NH4Cl 0.269192 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Sodium resazurin 0.000498504 g/l NaOH 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l Pyridoxine hydrochloride 9.97009e-05 g/l MnCl2 x 4 H2O 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Riboflavin 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Biotin 1.99402e-05 g/l Folic acid 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
1251	positive	growth	30

Physiology and metabolism

Oxygen tolerance

1251

Oxygen toleranceanaerobe

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Terrestrial	#Mud (Sludge)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
1251	anoxic freshwater mud	Konstanz, Wollmatingen	Germany	DEU	Europe

Taxonmaps

69479

Global distribution of 16S sequence X96956 (>99% sequence identity) for Acetobacterium from Microbeatlas

Aquatic Samples	21
Soil Samples	8
Animal Samples
Plant Samples
Total Samples	29

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1251	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	118465 assembly for Acetobacterium carbinolicum DSM 2925	complete	GCA_047456275	52690	99.09

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
1251	A.carbinolicum 16S rRNA gene	X96956	1469		52690

GC content

1251

GC-content (mol%)38.5

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Using gas mixtures of CO, CO₂ and H₂ as microbial substrates: the do's and don'ts of successful technology transfer from laboratory to production scale.	Takors R, Kopf M, Mampel J, Bluemke W, Blombach B, Eikmanns B, Bengelsdorf FR, Weuster-Botz D, Durre P.	Microb Biotechnol	10.1111/1751-7915.13270	2018
Metabolism	Carbon isotope fractionation of 11 acetogenic strains grown on H2 and CO2.	Blaser MB, Dreisbach LK, Conrad R.	Appl Environ Microbiol	10.1128/aem.03203-12	2013
Enzymology	Culturable prokaryotic diversity of deep, gas hydrate sediments: first use of a continuous high-pressure, anaerobic, enrichment and isolation system for subseafloor sediments (DeepIsoBUG).	Parkes RJ, Sellek G, Webster G, Martin D, Anders E, Weightman AJ, Sass H.	Environ Microbiol	10.1111/j.1462-2920.2009.02018.x	2009
Enzymology	Purification and characterization of acetoin:2,6-dichlorophenolindophenol oxidoreductase, dihydrolipoamide dehydrogenase, and dihydrolipoamide acetyltransferase of the Pelobacter carbinolicus acetoin dehydrogenase enzyme system.	Oppermann FB, Schmidt B, Steinbuchel A.	J Bacteriol	10.1128/jb.173.2.757-767.1991	1991
	Inhibition of methanogenesis by methyl fluoride: studies of pure and defined mixed cultures of anaerobic bacteria and archaea.	Janssen PH, Frenzel P.	Appl Environ Microbiol	10.1128/aem.63.11.4552-4557.1997	1997
Metabolism	Characterization of the H2- and CO-dependent chemolithotrophic potentials of the acetogens Clostridium thermoaceticum and Acetogenium kivui.	Daniel SL, Hsu T, Dean SI, Drake HL.	J Bacteriol	10.1128/jb.172.8.4464-4471.1990	1990
	Deep Subseafloor Biogeochemical Processes and Microbial Populations Potentially Associated with the 2011 Tohoku-oki Earthquake at the Japan Trench Accretionary Wedge (IODP Expedition 343).	Kawagucci S, Sakai S, Tasumi E, Hirai M, Takaki Y, Nunoura T, Saitoh M, Ueno Y, Yoshida N, Shibuya T, Clifford Sample J, Okumura T, Takai K.	Microbes Environ	10.1264/jsme2.me22108	2023
	Competitive Reactions during Ethanol Chain Elongation Were Temporarily Suppressed by Increasing Hydrogen Partial Pressure through Methanogenesis Inhibition.	Shrestha S, Xue S, Raskin L.	Environ Sci Technol	10.1021/acs.est.2c09014	2023
	Homoacetogenic Conversion of Mannitol by the Thermophilic Acetogenic Bacterium Thermoanaerobacter kivui Requires External CO₂.	Moon J, Jain S, Muller V, Basen M.	Front Microbiol	10.3389/fmicb.2020.571736	2020
Phylogeny	Characterization of the psychrotolerant acetogen strain SyrA5 and the emended description of the species Acetobacterium carbinolicum.	Paarup M, Friedrich MW, Tindall BJ, Finster K.	Antonie Van Leeuwenhoek	10.1007/s10482-005-9009-y	2006
	An iron corrosion-assisted H₂-supplying system: a culture method for methanogens and acetogens under low H₂ pressures.	Kato S, Takashino M, Igarashi K, Mochimaru H, Mayumi D, Tamaki H.	Sci Rep	10.1038/s41598-020-76267-z	2020
Enzymology	Characterization by culture and molecular analysis of the microbial diversity of a deep subsurface gas storage aquifer.	Basso O, Lascourreges JF, Le Borgne F, Le Goff C, Magot M.	Res Microbiol	10.1016/j.resmic.2008.10.010	2009
	Cultivation and biogeochemical analyses reveal insights into methanogenesis in deep subseafloor sediment at a biogenic gas hydrate site.	Katayama T, Yoshioka H, Kaneko M, Amo M, Fujii T, Takahashi HA, Yoshida S, Sakata S.	ISME J	10.1038/s41396-021-01175-7	2022
Metabolism	Microbial potential for carbon and nutrient cycling in a geogenic supercritical carbon dioxide reservoir.	Freedman AJE, Tan B, Thompson JR.	Environ Microbiol	10.1111/1462-2920.13706	2017
	The root zone of graminoids: A niche for H₂-consuming acetogens in a minerotrophic peatland.	Meier AB, Oppermann S, Drake HL, Schmidt O.	Front Microbiol	10.3389/fmicb.2022.978296	2022
	Potential of dynamic bacterial communities in the bio-corrosion process: a proof study with surface morphology of metal coupons.	Basera P, Lavania M, Lal B.	RSC Adv	10.1039/c9ra01959f	2019
Genetics	Defining Genomic and Predicted Metabolic Features of the Acetobacterium Genus.	Ross DE, Marshall CW, Gulliver D, May HD, Norman RS.	mSystems	10.1128/msystems.00277-20	2020
Metabolism	Isolation of acetogenic bacteria that induce biocorrosion by utilizing metallic iron as the sole electron donor.	Kato S, Yumoto I, Kamagata Y.	Appl Environ Microbiol	10.1128/aem.02767-14	2015
Phylogeny	Analysis of Bacterial Community Composition of Corroded Steel Immersed in Sanya and Xiamen Seawaters in China via Method of Illumina MiSeq Sequencing.	Li X, Duan J, Xiao H, Li Y, Liu H, Guan F, Zhai X.	Front Microbiol	10.3389/fmicb.2017.01737	2017
Metabolism	Carbon Isotope Fractionation during Catabolism and Anabolism in Acetogenic Bacteria Growing on Different Substrates.	Freude C, Blaser M.	Appl Environ Microbiol	10.1128/aem.03502-15	2016
Phylogeny	Microbial community structure and dynamics in anaerobic fluidized-bed and granular sludge-bed reactors: influence of operational temperature and reactor configuration.	Bialek K, Kumar A, Mahony T, Lens PN, O'Flaherty V.	Microb Biotechnol	10.1111/j.1751-7915.2012.00364.x	2012
	The transcriptional response of microbial communities in thawing Alaskan permafrost soils.	Coolen MJ, Orsi WD.	Front Microbiol	10.3389/fmicb.2015.00197	2015
Metabolism	Nonacetogenic growth of the acetogen Acetobacterium woodii on 1,2-propanediol.	Schuchmann K, Schmidt S, Martinez Lopez A, Kaberline C, Kuhns M, Lorenzen W, Bode HB, Joos F, Muller V.	J Bacteriol	10.1128/jb.02383-14	2015
Phylogeny	Quantitative PCR targeting 16S rRNA and reductive dehalogenase genes simultaneously monitors multiple Dehalococcoides strains.	Ritalahti KM, Amos BK, Sung Y, Wu Q, Koenigsberg SS, Loffler FE.	Appl Environ Microbiol	10.1128/aem.72.4.2765-2774.2006	2006
Genetics	Sulfate-Reducing Bacteria Isolated from an Oil Field in Kazakhstan and a Description of Pseudodesulfovibrio karagichevae sp. nov.	Bidzhieva SK, Tourova TP, Grouzdev DS, Samigullina SR, Sokolova DS, Poltaraus AB, Avtukh AN, Tereshina VM, Mardanov AV, Zhaparov NS, Nazina TN.	Microorganisms	10.3390/microorganisms12122552	2024

References

#1251	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2925
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Acetobacterium carbinolicum (DSM 2925, WoProp 1)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_047456275

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

BacDive

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