Pelagerythrobacter marensis (DSM 21428, KCTC 22370, MSW-14)

Name: Pelagerythrobacter marensis (DSM 21428, KCTC 22370, MSW-14)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5398

Type strain

Strain Designation MSW-14

Culture col. no. DSM 21428 KCTC 22370 MSW-14 UCCCB27

NCBI tax ID(s) 543877

Special Collections DSMZ KCTC Literature strains UCCCB

Links

Pelagerythrobacter marensis MSW-14 is an aerobe, mesophilic, Gram-negative prokaryote that forms circular colonies and was isolated from seawater.

Gram-negative motile rod-shaped colony-forming aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 398875

KCTC 22370,DSM 21428

@ref 20215

Last LPSN update 2025-12-16 09:48:03

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Erythrobacteraceae

Genus Pelagerythrobacter

Species Pelagerythrobacter marensis

Full scientific name Pelagerythrobacter marensis (Seo and Lee 2010) Xu et al. 2020

Synonyms (1)

Altererythrobacter marensis

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
29331	negative	1.5 µm	0.6 µm	rod-shaped
25743	negative	1-2 µm	0.5-0.7 µm	rod-shaped	monotrichous, polar
67771	negative
125439	negative					96.5
125438	negative					98.796

Colony morphology

@ref	Colony size	Colony color	Colony shape	Incubation period	Medium used
25743	0.8-1.0 mm	yellow opaque	circular	4 days	Marine agar 2216 (Difco)

Pigmentation

29331

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
15700	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
25743	Marine agar 2216 (Difco)

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
15700	positive	growth	28	mesophilic
25743	positive	optimum	30	mesophilic
25743	positive	growth	4-42
29331	positive	growth	04-42
29331	positive	optimum	30	mesophilic
67771	positive	growth	30	mesophilic
67772	positive	minimum	4	psychrophilic
67772	positive	optimum	30	mesophilic
67772	positive	maximum	42	thermophilic

Culture pH

@ref	Ability	Type	PH	PH range
67772	positive	maximum	11.1
67772	positive	minimum	6.1
29331	positive	optimum	7.1
25743	positive	optimum	7.1
67772	positive	optimum	7.1
29331	positive	growth	6.1-11.1	alkaliphile
25743	positive	growth	6.1-11.1

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29331	aerobe
25743	obligate aerobe
67771	aerobe
125439	obligate aerobe	98.4

Spore formation

@ref	Spore formation	Confidence
125439		97.8
125438		93.095

Halophily

@ref	Salt	Growth	Tested relation	Concentration
29331	NaCl	positive	growth	0-9 %
29331	NaCl	positive	optimum	2 %
25743	NaCl	positive	growth	0-9 %
25743	NaCl	positive	optimum	0-4 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
25743	355715 ChEBI	4-nitrophenyl-beta-D-galactoside	-	assimilation
25743	17128 ChEBI	adipate	-	assimilation
25743		casein	-	degradation
25743	62968 ChEBI	cellulose	-	degradation
25743	17029 ChEBI	chitin	-	degradation
25743	16947 ChEBI	citrate	-	assimilation
25743	8391 ChEBI	D-gluconate	-	assimilation
25743	17634 ChEBI	D-glucose	-	fermentation
25743	17634 ChEBI	D-glucose	-	assimilation
25743	16899 ChEBI	D-mannitol	-	assimilation
25743	16024 ChEBI	D-mannose	-	assimilation
25743	27689 ChEBI	decanoate	-	assimilation
25743	16991 ChEBI	dna	-	degradation
29331	4853 ChEBI	esculin	+	hydrolysis
25743	4853 ChEBI	esculin	+	hydrolysis
25743	5291 ChEBI	gelatin	-	hydrolysis
25743	17368 ChEBI	hypoxanthine	-	degradation
25743	30849 ChEBI	L-arabinose	-	assimilation
29331	25115 ChEBI	malate	+	carbon source
25743	25115 ChEBI	malate	+	assimilation
25743	17306 ChEBI	maltose	-	assimilation
25743	506227 ChEBI	N-acetylglucosamine	-	assimilation
25743	63043 ChEBI	nitrate	-	reduction
25743	18401 ChEBI	phenylacetate	-	assimilation
25743	28017 ChEBI	starch	-	degradation
25743	53426 ChEBI	tween 80	+	degradation
25743	18186 ChEBI	tyrosine	-	degradation
25743	16199 ChEBI	urea	-	degradation
25743	15318 ChEBI	xanthine	-	degradation

Metabolite production

@ref	Chebi-ID	Metabolite	Production
25743	30033 ChEBI	bacteriochlorophyll alpha

Enzymes

@ref	Value	Activity	Ec
29331	acid phosphatase	+	3.1.3.2
25743	acid phosphatase	+	3.1.3.2
29331	alkaline phosphatase	+	3.1.3.1
25743	alkaline phosphatase	+	3.1.3.1
25743	alpha-chymotrypsin	+	3.4.21.1
25743	alpha-fucosidase	-	3.2.1.51
25743	alpha-galactosidase	-	3.2.1.22
25743	alpha-glucosidase	-	3.2.1.20
25743	alpha-mannosidase	-	3.2.1.24
25743	beta-glucosidase	-	3.2.1.21
25743	beta-glucuronidase	-	3.2.1.31
29331	catalase	+	1.11.1.6
25743	cystine arylamidase	-	3.4.11.3
29331	cytochrome oxidase	+	1.9.3.1
25743	esterase (C 4)	+
25743	esterase Lipase (C 8)	+
25743	leucine arylamidase	+	3.4.11.1
25743	lipase (C 14)	-
25743	N-acetyl-beta-glucosaminidase	-	3.2.1.52
25743	naphthol-AS-BI-phosphohydrolase	+
25743	trypsin	-	3.4.21.4
25743	valine arylamidase	+

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	palmitate biosynthesis	100	22 of 22
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	formaldehyde oxidation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	ppGpp biosynthesis	100	4 of 4
66794	biotin biosynthesis	100	4 of 4
66794	cardiolipin biosynthesis	100	7 of 7
66794	quinate degradation	100	2 of 2
66794	valine metabolism	100	9 of 9
66794	methylglyoxal degradation	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	folate polyglutamylation	100	1 of 1
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	Entner Doudoroff pathway	90	9 of 10
66794	threonine metabolism	90	9 of 10
66794	chorismate metabolism	88.89	8 of 9
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	isoleucine metabolism	87.5	7 of 8
66794	photosynthesis	85.71	12 of 14
66794	leucine metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	glutamate and glutamine metabolism	82.14	23 of 28
66794	phenylacetate degradation (aerobic)	80	4 of 5
66794	peptidoglycan biosynthesis	80	12 of 15
66794	glycogen metabolism	80	4 of 5
66794	citric acid cycle	78.57	11 of 14
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	NAD metabolism	77.78	14 of 18
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	lactate fermentation	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	alanine metabolism	72.41	21 of 29
66794	ubiquinone biosynthesis	71.43	5 of 7
66794	heme metabolism	71.43	10 of 14
66794	purine metabolism	70.21	66 of 94
66794	propionate fermentation	70	7 of 10
66794	methionine metabolism	69.23	18 of 26
66794	degradation of sugar alcohols	68.75	11 of 16
66794	d-mannose degradation	66.67	6 of 9
66794	octane oxidation	66.67	2 of 3
66794	flavin biosynthesis	66.67	10 of 15
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	molybdenum cofactor biosynthesis	66.67	6 of 9
66794	tryptophan metabolism	65.79	25 of 38
66794	isoprenoid biosynthesis	65.38	17 of 26
66794	glycolysis	64.71	11 of 17
66794	lipid metabolism	64.52	20 of 31
66794	tyrosine metabolism	64.29	9 of 14
66794	glutathione metabolism	64.29	9 of 14
66794	pentose phosphate pathway	63.64	7 of 11
66794	proline metabolism	63.64	7 of 11
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	cysteine metabolism	61.11	11 of 18
66794	polyamine pathway	60.87	14 of 23
66794	non-pathway related	60.53	23 of 38
66794	ethylmalonyl-CoA pathway	60	3 of 5
66794	pyrimidine metabolism	60	27 of 45
66794	arginine metabolism	58.33	14 of 24
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	propanol degradation	57.14	4 of 7
66794	lipid A biosynthesis	55.56	5 of 9
66794	histidine metabolism	55.17	16 of 29
66794	lysine metabolism	54.76	23 of 42
66794	d-xylose degradation	54.55	6 of 11
66794	metabolism of disaccharids	54.55	6 of 11
66794	vitamin B1 metabolism	53.85	7 of 13
66794	phosphatidylethanolamine bioynthesis	53.85	7 of 13
66794	sulfate reduction	53.85	7 of 13
66794	phenol degradation	50	10 of 20
66794	resorcinol degradation	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	glycogen biosynthesis	50	2 of 4
66794	cyclohexanol degradation	50	2 of 4
66794	degradation of sugar acids	48	12 of 25
66794	urea cycle	46.15	6 of 13
66794	vitamin B6 metabolism	45.45	5 of 11
66794	arachidonic acid metabolism	44.44	8 of 18
66794	oxidative phosphorylation	43.96	40 of 91
66794	reductive acetyl coenzyme A pathway	42.86	3 of 7
66794	gallate degradation	40	2 of 5
66794	3-phenylpropionate degradation	40	6 of 15
66794	D-cycloserine biosynthesis	40	2 of 5
66794	cellulose degradation	40	2 of 5
66794	glycine betaine biosynthesis	40	2 of 5
66794	vitamin K metabolism	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	lipoate biosynthesis	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	ketogluconate metabolism	37.5	3 of 8
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	IAA biosynthesis	33.33	1 of 3
66794	cyanate degradation	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	nitrate assimilation	33.33	3 of 9
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	degradation of hexoses	33.33	6 of 18
66794	pantothenate biosynthesis	33.33	2 of 6
66794	carotenoid biosynthesis	31.82	7 of 22
66794	myo-inositol biosynthesis	30	3 of 10
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	aclacinomycin biosynthesis	28.57	2 of 7
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	degradation of pentoses	28.57	8 of 28
66794	cholesterol biosynthesis	27.27	3 of 11
66794	CMP-KDO biosynthesis	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	catecholamine biosynthesis	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	carnitine metabolism	25	2 of 8
66794	ascorbate metabolism	22.73	5 of 22
66794	4-hydroxymandelate degradation	22.22	2 of 9

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Sampling date	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Enrichment culture	Enrichment culture duration	Enrichment culture temperature	Isolation procedure
15700	seawater		Jeju, Mara Island	Republic of Korea	KOR	Asia
25743	Seawater samples from the surface near the coast of Mara Island	2007-04	Jeju	Republic of Korea	KOR	Asia	33	126.128 33/126.128	Casein-Starch agar (Küster & Williams 1964)	14 days	30	direct plating of seawater samples
67771	From seawater		Mara island, Jeju	Republic of Korea	KOR	Asia
67772	Seawater samples were collected from the sea surface	2007	Jeju	Republic of Korea	KOR	Asia	33.1167	126.267 33.1167/126.267

Taxonmaps

69479

Global distribution of 16S sequence FM177586 (>99% sequence identity) for Pelagerythrobacter marensis from Microbeatlas

Aquatic Samples	39
Soil Samples	17
Animal Samples	6
Plant Samples	3
Total Samples	65

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
15700	1	Risk group (German classification) According to TRBA 466
67772	1

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM102862v1 assembly for Pelagerythrobacter marensis KCTC 22370	complete	GCA_001028625	543877.4	2648501407	543877	96.26
66792	ASM146188v1 assembly for Pelagerythrobacter marensis DSM 21428	contig	GCA_001461885	543877.5	2744054505	543877	73.69

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
15700	Alterierythrobacter sp. MSW-14 partial 16S rRNA gene, type strain MSW-14	FM177586	1397		543877

GC content

@ref	GC-content (mol%)	Method
15700	63.1	high performance liquid chromatography (HPLC)
29331	63.1

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Altererythrobacter marensis strain KCTC 22370
PATRIC: 543877.4

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	97.80	no
125439	motility	BacteriaNetⓘ	yes	65.30	no
125439	gram_stain	BacteriaNetⓘ	negative	96.50	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	98.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pelagerythrobacter marensis KCTC 22370
NCBI: GCA_001028625.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.80	yes
125438	anaerobic	anaerobicⓘ	no	96.03	yes
125438	aerobic	aerobicⓘ	yes	86.52	yes
125438	spore-forming	spore-formingⓘ	no	93.10	no
125438	thermophilic	thermophileⓘ	no	94.50	no
125438	flagellated	motile2+ⓘ	yes	61.58	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Actirhodobacter atriluteus gen. nov., sp. nov., isolated from the surface water of the Yellow Sea.	Xue HP, Zhang DF, Xu L, Wang XN, Zhang AH, Huang JK, Liu C	Antonie Van Leeuwenhoek	10.1007/s10482-021-01576-w	2021

References

#15700	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21428
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#25743	IJSEM 307 2010 ( DOI 10.1099/ijs.0.011031-0 , PubMed 19651736 )
#29331	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25743
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#67772	The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pelagerythrobacter marensis (DSM 21428, KCTC 22370, MSW-14)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Enzymes

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001028625

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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