Name: Erythrobacter sanguineus A91
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5391

Type strain:

Species: Erythrobacter sanguineus

Strain Designation: A91

Culture col. no.: DSM 11032, ATCC 25659, IAM 12620, ICPB 4167, IFO 15763, NBRC 15763, JCM 20691, LMG 160, NCIMB 1539, CIP 107821

Strain history: CIP <- 2003, IAM <- ATCC <- R. Ahrens: strain A91

NCBI tax ID(s): 198312 (species)

SI-ID 450

LMG 160, ATCC 25659, IAM 12620, LMG 8177, IFO 15763, NCIMB 1539, CECT 4271, DSM 11032, NBRC 15763, NCMB 1539, JCM 20691, CIP 107821

Special Collections

Section

Erythrobacter sanguineus A91 is an obligate aerobe, Gram-negative bacterium that was isolated from brackish water.

Gram-negative
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Erythrobacter*
	Species	**Erythrobacter sanguineus**
	Full Scientific Name (LPSN)	Erythrobacter sanguineus (Hiraishi et al. 2002 ex Ahrens and Rheinheimer 1967) Xu et al. 2020

Synonym

Porphyrobacter sanguineus

Information on morphological and physiological properties Morphology

[Ref.: #122421]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.838

[Ref.: #122421]	Cell shape	oval-shaped

[Ref.: #122421]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4165]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #4165]

Culture medium growth

[Ref.: #4165]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4165]

Culture medium composition

expand / minimize

[Ref.: #37137]

Culture medium

Marine agar (MA)

[Ref.: #37137]

Culture medium growth

[Ref.: #37137]

Culture medium composition

expand / minimize

[Ref.: #122421]

Culture medium

CIP Medium 13

[Ref.: #122421]

Culture medium growth

[Ref.: #122421]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #4165]		growth	25 °C
[Ref.: #37137]		growth	25 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #122421]		growth	15-37 °C
[Ref.: #122421]	no	growth	5 °C
[Ref.: #122421]	no	growth	41 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #122421]

Oxygen tolerance

obligate aerobe

[Ref.: #69480]	Ability of spore formation	no Confidence in %93.844
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #122421]	NaCl		growth	0	%
[Ref.: #122421]	NaCl	no	growth	2	%
[Ref.: #122421]	NaCl	no	growth	4	%
[Ref.: #122421]	NaCl	no	growth	6	%
[Ref.: #122421]	NaCl	no	growth	8	%
[Ref.: #122421]	NaCl	no	growth	10	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #122421]	citrate ChEBI	-	carbon source
[Ref.: #122421]	esculin ChEBI	+	hydrolysis
[Ref.: #122421]	glucose ChEBI	-	degradation
[Ref.: #122421]	nitrate ChEBI	-	reduction
[Ref.: #122421]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #122421]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #122421]		acetoin ChEBI	-
[Ref.: #122421]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122421]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	+	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #122421]	amylase	-
[Ref.: #122421]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122421]	caseinase	-	3.4.21.50
[Ref.: #122421]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122421]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #122421]	gelatinase	-
[Ref.: #122421]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #122421]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122421]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122421]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122421]	oxidase	+
[Ref.: #122421]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #122421]	protease	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #122421]	tryptophan deaminase	-
[Ref.: #122421]	tween esterase	-
[Ref.: #122421]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122421]	10675	-	+	+	+	-	+	-	-	+	+	+	+	-	+	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4165]	Sample type/isolated from	brackish water
[Ref.: #4165]	Geographic location (country and/or sea, region)	Baltic Sea

[Ref.: #67770]	Sample type/isolated from	Brackish water
[Ref.: #67770]	Geographic location (country and/or sea, region)	Baltic Sea

[Ref.: #122421]	Sample type/isolated from	Environment, Brackish water
[Ref.: #122421]	Country	Baltic Sea
[Ref.: #122421]	Isolation date	1967
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Brackish

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB021493 (>99% sequence identity) for Erythrobacter sanguineus from Microbeatlas

Aquatic Samples	1918
Soil Samples	329
Animal Samples	210
Plant Samples	37
Total Samples	2494

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4165]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122421]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4165]	Porphyrobacter sanguineus DNA for 16S rRNA, strain IAM 12620	AB021493	1479	GenBank ENA	198312 tax ID
[Ref.: #20218]	Porphyrobacter sanguineus gene for 16S rRNA, partial sequence, strain: NBRC 15763	AB680961	1412	GenBank ENA	198312 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Erythrobacter sanguineus DSM 11032	GCA_900143235	contig	GenBank ENA	198312 tax ID
[Ref.: #67770]	Erythrobacter sanguineus JCM 20691	GCA_002155655	scaffold	GenBank ENA	198312 tax ID
[Ref.: #66792]	Porphyrobacter sanguineus strain DSM 11032	198312.3	wgs	PATRIC	198312 tax ID	*
[Ref.: #66792]	Porphyrobacter sanguineus strain JCM 20691	198312.6	wgs	PATRIC	198312 tax ID	*
[Ref.: #66792]	Porphyrobacter sanguineus JCM 20691	2848682527	draft	JGI IMG/M	198312 tax ID	*
[Ref.: #66792]	Porphyrobacter sanguineus DSM 11032	2582580729	draft	JGI IMG/M	198312 tax ID	*

[Ref.: #67770]

GC-content

63.6 mol%

genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Porphyrobacter sanguineus strain JCM 20691 PATRIC: 198312.6
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Porphyrobacter sanguineus strain DSM 11032 PATRIC: 198312.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.838	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	94.809	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	93.844	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	89.304	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	94.319	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	59.992	no

Availability in culture collections External links

[Ref.: #4165]

Culture collection no.

DSM 11032, ATCC 25659, IAM 12620, ICPB 4167, IFO 15763, NBRC 15763, JCM 20691, LMG 160, NCIMB 1539, CIP 107821

[Ref.: #74881]

SI-ID 450

References

#4165

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11032

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37137 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74881

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID450.1 )

#122421 Collection of Institut Pasteur ; Curators of the CIP; CIP 107821
* These data were automatically processed and therefore are not curated

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Porphyrobacter sanguineus strain JCM 20691

Porphyrobacter sanguineus strain DSM 11032

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