Erythrobacter sanguineus (DSM 11032, ATCC 25659, IAM 12620)

Name: Erythrobacter sanguineus (DSM 11032, ATCC 25659, IAM 12620)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5391

Type strain

Strain Designation A91

Culture col. no. DSM 11032 ATCC 25659 IAM 12620 ICPB 4167 IFO 15763 6 more

NCBI tax ID(s) 198312

Special Collections DSMZ JCM CIP

Links

Erythrobacter sanguineus A91 is an obligate aerobe, mesophilic, Gram-negative prokaryote that was isolated from brackish water.

Gram-negative motile oval-shaped obligate aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 450

LMG 160,ATCC 25659,IAM 12620,LMG 8177,IFO 15763,NCIMB 1539,CECT 4271,DSM 11032,NBRC 15763,NCMB 1539,JCM 20691,CIP 107821

@ref 20215

Last LPSN update 2025-12-16 09:48:03

Domain Pseudomonadati

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Erythrobacteraceae

Genus Erythrobacter

Species Erythrobacter sanguineus

Full scientific name Erythrobacter sanguineus (Hiraishi et al. 2002 ex Ahrens and Rheinheimer 1967) Xu et al. 2020

Synonyms (2)

"Agrobacterium sanguineum"
Porphyrobacter sanguineus

Morphology

Cell morphology

@ref	Gram stain	Cell shape
122421	negative	oval-shaped
125438	negative
125439	negative

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
4165	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
37137	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
122421	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
4165	positive	growth	25	mesophilic
37137	positive	growth	25	mesophilic
67770	positive	growth	25	mesophilic
122421	positive	growth	15-37
122421	negative	growth	5
122421	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
122421	obligate aerobe
125439	aerobe

Spore formation

@ref	Spore formation	Confidence
125438		93.844
125439		96.5

Halophily

@ref	Salt	Growth	Tested relation	Concentration
122421	NaCl	positive	growth	0 %
122421	NaCl		growth	2 %
122421	NaCl		growth	4 %
122421	NaCl		growth	6 %
122421	NaCl		growth	8 %
122421	NaCl		growth	10 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
122421	16947 ChEBI	citrate	-	carbon source
122421	4853 ChEBI	esculin	+	hydrolysis
122421	17234 ChEBI	glucose	-	degradation
122421	17632 ChEBI	nitrate	-	reduction
122421	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
122421	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test
122421	15688 ChEBI	acetoin	-
122421	17234 ChEBI	glucose

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
122421	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	+	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
122421	amylase	-
68382	beta-galactosidase	+	3.2.1.23	from API zym
122421	beta-galactosidase	+	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
122421	caseinase	-	3.4.21.50
122421	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
122421	gamma-glutamyltransferase	+	2.3.2.2
122421	gelatinase	-
122421	lecithinase	-
68382	leucine arylamidase	+	3.4.11.1	from API zym
122421	lipase	-
68382	lipase (C 14)	-		from API zym
122421	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
122421	ornithine decarboxylase	-	4.1.1.17
122421	oxidase	+
122421	phenylalanine ammonia-lyase	-	4.3.1.24
122421	protease	-
68382	trypsin	+	3.4.21.4	from API zym
122421	tryptophan deaminase	-
122421	tween esterase	-
122421	urease	-	3.5.1.5
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
122421	-	+	+	+	-	+	-	-	+	+	+	+	-	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Brackish

Isolation

@ref	Sample type	Geographic location
4165	brackish water	Baltic Sea
67770	Brackish water	Baltic Sea
122421	Environment, Brackish water

Taxonmaps

69479

Global distribution of 16S sequence AB021493 (>99% sequence identity) for Erythrobacter sanguineus from Microbeatlas

Aquatic Samples	1918
Soil Samples	329
Animal Samples	210
Plant Samples	37
Total Samples	2494

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4165	1	Risk group (German classification) According to TRBA 466
122421	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	IMG-taxon 2582580729 annotated assembly for Erythrobacter sanguineus DSM 11032	contig	GCA_900143235	198312.3	2582580729	198312	70.68
67770	ASM215565v1 assembly for Erythrobacter sanguineus JCM 20691	scaffold	GCA_002155655	198312.6	2848682527	198312	68.04

Genome browser: GCA_900143235

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Porphyrobacter sanguineus gene for 16S rRNA, partial sequence, strain: NBRC 15763	AB680961	1412		198312
4165	Porphyrobacter sanguineus DNA for 16S rRNA, strain IAM 12620	AB021493	1479		198312

GC content

@ref	GC-content (mol%)	Method
67770	63.6	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Erythrobacter sanguineus JCM 20691
NCBI: GCA_002155655

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.50	no
125439	motility	BacteriaNetⓘ	yes	78.30	no
125439	gram_stain	BacteriaNetⓘ	negative	97.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	94.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Porphyrobacter sanguineus strain DSM 11032
PATRIC: 198312.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.84	no
125438	anaerobic	anaerobicⓘ	no	94.81	no
125438	spore-forming	spore-formingⓘ	no	93.84	no
125438	aerobic	aerobicⓘ	yes	89.30	yes
125438	thermophilic	thermophileⓘ	no	94.32	yes
125438	flagellated	motile2+ⓘ	yes	59.99	no

Literature

References

#4165	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11032
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#37137	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#122421	Collection of Institut Pasteur ; Curators of the CIP; CIP 107821
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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