Name: Qipengyuania citrea RE35F/1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5382

Type strain:

Species: Qipengyuania citrea

Strain Designation: RE35F/1

Culture col. no.: DSM 14432, CIP 107092, JCM 21816, CGMCC 1.8703, CGMCC 1.8709, IAM 15372, KCTC 12214

Strain history: CIP <- 2001, E.B.M. Denner, Inst. Mikrobiol. Genetik, Vienna, Austria: strain RE35F/1 <- D. Vybiral

NCBI tax ID(s): 225971 (species)

SI-ID 100645

CIP 107092, DSM 14432, KCTC 12214, JCM 21816, IAM 15372

Special Collections

Section

Qipengyuania citrea RE35F/1 is a Gram-negative bacterium that was isolated from seawater.

Gram-negative
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Qipengyuania*
	Species	**Qipengyuania citrea**
	Full Scientific Name (LPSN)	Qipengyuania citrea (Denner et al. 2002) Xu et al. 2020

Synonym

Erythrobacter citreus

Information on morphological and physiological properties Morphology

[Ref.: #118302]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.833

[Ref.: #118302]	Cell shape	oval-shaped

[Ref.: #118302]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5351]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #5351]

Culture medium growth

[Ref.: #5351]

Culture medium link

Medium recipe at MediaDive

[Ref.: #5351]

Culture medium composition

expand / minimize

[Ref.: #38663]

Culture medium

Marine agar (MA)

[Ref.: #38663]

Culture medium growth

[Ref.: #38663]

Culture medium composition

expand / minimize

[Ref.: #118302]

Culture medium

CIP Medium 13

[Ref.: #118302]

Culture medium growth

[Ref.: #118302]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #5351]		growth	20 °C
[Ref.: #38663]		growth	25 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #118302]		growth	25-37 °C
[Ref.: #118302]	no	growth	5 °C
[Ref.: #118302]	no	growth	15 °C
[Ref.: #118302]	no	growth	41 °C
[Ref.: #118302]	no	growth	45 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]	Ability of spore formation	no Confidence in %90.85
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

	Salt	Tested relation		Salt conc.
[Ref.: #118302]	NaCl	no	growth	0	%
[Ref.: #118302]	NaCl	no	growth	2	%
[Ref.: #118302]	NaCl	no	growth	4	%
[Ref.: #118302]	NaCl	no	growth	6	%
[Ref.: #118302]	NaCl	no	growth	8	%
[Ref.: #118302]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: Q-10

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #118302]	citrate ChEBI	-	carbon source
[Ref.: #118302]	esculin ChEBI	-	hydrolysis
[Ref.: #118302]	glucose ChEBI	-	degradation
[Ref.: #118302]	hippurate ChEBI	+	hydrolysis
[Ref.: #118302]	malonate ChEBI	-	assimilation
[Ref.: #118302]	nitrate ChEBI	-	builds gas from
[Ref.: #118302]	nitrate ChEBI	-	reduction
[Ref.: #118302]	nitrate ChEBI	-	respiration
[Ref.: #118302]	nitrite ChEBI	-	builds gas from
[Ref.: #118302]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #118302]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #118302]		acetoin ChEBI	-
[Ref.: #118302]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #118302]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	-	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #118302]	amylase	-
[Ref.: #118302]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #118302]	caseinase	-	3.4.21.50
[Ref.: #118302]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #118302]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #118302]	gelatinase	-
[Ref.: #118302]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #118302]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #118302]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #118302]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #118302]	oxidase	+
[Ref.: #118302]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #118302]	protease	-
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #118302]	tryptophan deaminase	-
[Ref.: #118302]	tween esterase	+
[Ref.: #118302]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #118302]	10057	-	+	+	+	-	+	+	+	-	-	+	+	-	-	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5351]	Sample type/isolated from	seawater
[Ref.: #5351]	Geographic location (country and/or sea, region)	Corsica, Bay of Calvi
[Ref.: #5351]	Country	France
[Ref.: #5351]	Country ISO 3 Code	FRA
[Ref.: #5351]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Western Mediterranean Sea

[Ref.: #118302]	Sample type/isolated from	Environment, Seawater
[Ref.: #118302]	Geographic location (country and/or sea, region)	Corsica
[Ref.: #118302]	Country	France
[Ref.: #118302]	Country ISO 3 Code	FRA
[Ref.: #118302]	Continent	Europe
[Ref.: #118302]	Isolation date	1994
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AF118020 (>99% sequence identity) for Qipengyuania from Microbeatlas

Aquatic Samples	489
Soil Samples	28
Animal Samples	32
Plant Samples	14
Total Samples	563

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5351]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118302]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Erythrobacter citreus 16S ribosomal RNA gene, partial sequence	AF227259	1359	GenBank ENA	225971 tax ID
[Ref.: #5351]	Erythrobacter citreus strain RE35F/1 16S ribosomal RNA gene, partial sequence	AF118020	1444	GenBank ENA	225971 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Qipengyuania citrea CGMCC 1.8703	GCA_009828015	contig	GenBank ENA	225971 tax ID
[Ref.: #66792]	Erythrobacter citreus strain CGMCC 1.8703	225971.7	wgs	PATRIC	225971 tax ID	*
[Ref.: #66792]	Erythrobacter citreus DSM 14432	2928592673	draft	JGI IMG/M	225971 tax ID	*

[Ref.: #5351]	GC-content	62.0-62.4 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	64.2 mol%	genome sequence analysis
[Ref.: #67770]	GC-content	62 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Erythrobacter citreus strain CGMCC 1.8703 PATRIC: 225971.7
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Erythrobacter citreus strain CGMCC 1.8703 PATRIC: 225971.7
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.833	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.241	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	90.85	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	87.647	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	95.687	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	no	59.047	no

Availability in culture collections External links

[Ref.: #5351]

Culture collection no.

DSM 14432, CIP 107092, JCM 21816, CGMCC 1.8703, CGMCC 1.8709, IAM 15372, KCTC 12214

[Ref.: #74872]

SI-ID 100645

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Qipengyuania soli sp. nov., Isolated from Mangrove Soil.	Liu Y, Pei T, Deng MR, Zhu H	Curr Microbiol	10.1007/s00284-021-02538-1	2021	*

References

#5351

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14432

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#38663 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74872

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100645.1 )

#118302 Collection of Institut Pasteur ; Curators of the CIP; CIP 107092
* These data were automatically processed and therefore are not curated

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Erythrobacter citreus strain CGMCC 1.8703

Erythrobacter citreus strain CGMCC 1.8703

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