Solobacterium moorei (DSM 22971, CIP 106864, JCM 10645)

Name: Solobacterium moorei (DSM 22971, CIP 106864, JCM 10645)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5375

Type strain

Strain Designation RCA59-74

Culture col. no. DSM 22971 CIP 106864 JCM 10645 RCA59-74 KCTC 15084

NCBI tax ID(s) 1123263 102148

Special Collections DSMZ JCM KCTC CIP

History <- JCM; JCM 10645 <- Y. Benno; RCA59-74 Y. Benno RCA59-74. CIP <- 2000, JCM <- Y. Benno: strain RCA59-74

Links

Solobacterium moorei RCA59-74 is an anaerobe, Gram-positive, rod-shaped bacterium that was isolated from human feces.

Gram-positive rod-shaped anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 88236

JCM 10645,CIP 106864,DSM 22971

@ref 20215

Last LPSN update 2026-02-09 11:18:57

Domain Bacteria

Phylum Bacillota

Class Erysipelotrichia

Order Erysipelotrichales

Family Erysipelotrichaceae

Genus Solobacterium

Species Solobacterium moorei

Full scientific name Solobacterium moorei Kageyama and Benno 2000

BacDive ID	Other strains from **Solobacterium moorei** (4)	Type strain
150232	S. moorei CCUG 39336
155834	S. moorei CCUG 59440
161013	S. moorei JCM 10646
161014	S. moorei JCM 10647

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility	Confidence
121136	positive	rod-shaped
125438				92

Colony morphology

Multimedia

@ref:	66793
multimedia content:	EM_DSM_22971_1.jpg
multimedia.multimedia content:	EM_DSM_22971_1.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_22971_2.jpg
multimedia.multimedia content:	EM_DSM_22971_2.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_22971_3.jpg
multimedia.multimedia content:	EM_DSM_22971_3.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_22971_4.jpg
multimedia.multimedia content:	EM_DSM_22971_4.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

@ref:	66793
multimedia content:	EM_DSM_22971_5.jpg
multimedia.multimedia content:	EM_DSM_22971_5.jpg
caption:	electron microscopic image
intellectual property rights:	© HZI/Manfred Rohde
manual_annotation:	1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16566	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
16566	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
16566	anaerobe
121136	anaerobe
125439	anaerobe	96.2

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
121136	17057 ChEBI	cellobiose	-	degradation
68367	17057 ChEBI	cellobiose	-	builds acid from	from API 20A
121136	15824 ChEBI	D-fructose	+	degradation
121136	17634 ChEBI	D-glucose	+	degradation
68367	17634 ChEBI	D-glucose	+	builds acid from	from API 20A
68367	16899 ChEBI	D-mannitol	-	builds acid from	from API 20A
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68367	16024 ChEBI	D-mannose	-	builds acid from	from API 20A
121136	65327 ChEBI	D-xylose	-	degradation
68367	65327 ChEBI	D-xylose	-	builds acid from	from API 20A
121136	4853 ChEBI	esculin	+	hydrolysis
68367	4853 ChEBI	esculin	-	hydrolysis	from API 20A
68367	5291 ChEBI	gelatin	+	hydrolysis	from API 20A
68367	17754 ChEBI	glycerol	-	builds acid from	from API 20A
68367	30849 ChEBI	L-arabinose	-	builds acid from	from API 20A
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68367	62345 ChEBI	L-rhamnose	-	builds acid from	from API 20A
121136	17716 ChEBI	lactose	-	degradation
68367	17716 ChEBI	lactose	-	builds acid from	from API 20A
121136	17306 ChEBI	maltose	-	degradation
68367	17306 ChEBI	maltose	-	builds acid from	from API 20A
68367	6731 ChEBI	melezitose	-	builds acid from	from API 20A
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
121136	17632 ChEBI	nitrate	-	reduction
121136	17632 ChEBI	nitrate	+	respiration
121136	16301 ChEBI	nitrite	-	reduction
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68367	16634 ChEBI	raffinose	-	builds acid from	from API 20A
121136	17814 ChEBI	salicin	-	degradation
68367	17814 ChEBI	salicin	-	builds acid from	from API 20A
68367	30911 ChEBI	sorbitol	-	builds acid from	from API 20A
121136	17992 ChEBI	sucrose	+	degradation
68367	17992 ChEBI	sucrose	-	builds acid from	from API 20A
68367	27082 ChEBI	trehalose	-	builds acid from	from API 20A
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68367	27897 ChEBI	tryptophan	-	energy source	from API 20A
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A
68367	16199 ChEBI	urea	-	hydrolysis	from API 20A

Metabolite production

@ref	Chebi-ID	Metabolite
68380	35581 ChEBI	indole	from API rID32A
121136	35581 ChEBI	indole
68367	35581 ChEBI	indole	from API 20A

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68380	35581 ChEBI	indole	-	from API rID32A
68367	35581 ChEBI	indole	-	from API 20A

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	-	3.1.3.2	from API zym
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68382	alkaline phosphatase	-	3.1.3.1	from API zym
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
121136	amylase	+
68382	beta-galactosidase	-	3.2.1.23	from API zym
121136	beta-galactosidase	-	3.2.1.23
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68382	beta-glucosidase	-	3.2.1.21	from API zym
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68367	beta-glucosidase	-	3.2.1.21	from API 20A
68382	beta-glucuronidase	-	3.2.1.31	from API zym
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
121136	caseinase	+	3.4.21.50
121136	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
121136	DNase	-
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	-		from API zym
121136	gelatinase	+/-
68367	gelatinase	+		from API 20A
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68380	L-arginine arylamidase	+		from API rID32A
121136	lecithinase	-
68382	leucine arylamidase	-	3.4.11.1	from API zym
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
121136	lipase	-
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68382	naphthol-AS-BI-phosphohydrolase	-		from API zym
121136	oxidase	-
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
121136	protease	-
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68382	trypsin	-	3.4.21.4	from API zym
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
121136	tween esterase	+
121136	urease	-	3.5.1.5
68380	urease	-	3.5.1.5	from API rID32A
68367	urease	-	3.5.1.5	from API 20A
68382	valine arylamidase	-		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
121136	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API 20A

@ref	IND	URE	GLU	MAN	LAC	SAC	MAL	SAL	XYL	ARA	GEL	ESC	GLY	CEL	MNE	MLZ	RAF	SOR	RHA	TRE	CAT	Spores presentSPOR	GramGRAM	Morphology coccus="+" rod="-"COCC
16566	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
16566	-	-	-	+	-	+	-	-	-	not determinedn.d.	-	-	not determinedn.d.	not determinedn.d.	-	-	+/-	+	-	-	-	+	-	-	-	-	+	-	-
16566	-	+	-	-	-	+/-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	-	-	-	-	-	-
16566	-	-	-	+/-	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+/-	-	-	-	-	-	-	-
16566	-	+	+/-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	+	-	+/-	-	-	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
16566	human feces	Japan	JPN	Asia
67770	Human feces	Japan	JPN	Asia
121136	Human, Intestine	Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16566	2	Risk group (German classification) According to TRBA 466
121136	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM3632347v1 assembly for Solobacterium moorei JCM 10645	complete	GCA_036323475	102148.219		102148	94.58
67770	ASM42500v1 assembly for Solobacterium moorei DSM 22971	scaffold	GCA_000425005	1123263.3	2524614654	1123263	42.22

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Solobacterium moorei gene for 16S ribosomal RNA, partial sequence, strain: JCM 10645	AB540987	1486	102148
20218	Solobacterium moorei strain JCM 10645 16S ribosomal RNA gene, partial sequence	AY044916	1480	102148
16566	Solobacterium moorei gene for 16S rRNA, isolate:RCA59-74	AB031056	1487	102148

GC content

@ref	GC-content (mol%)	Method
16566	37.8	high performance liquid chromatography (HPLC)
67770	37.8

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Solobacterium moorei DSM 22971
NCBI: GCA_000425005

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	65.60	no
125439	motility	BacteriaNetⓘ	no	58.90	no
125439	gram_stain	BacteriaNetⓘ	variable	75.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	96.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Solobacterium moorei DSM 22971
PATRIC: 1123263.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	85.81	no
125438	anaerobic	anaerobicⓘ	yes	83.23	yes
125438	spore-forming	spore-formingⓘ	no	74.48	no
125438	aerobic	aerobicⓘ	no	98.36	yes
125438	thermophilic	thermophileⓘ	no	96.99	yes
125438	flagellated	motile2+ⓘ	no	92.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	In Vitro Antibacterial Effectiveness of a Naturopathic Oral Care Product on Oral Pathogens.	Beyer A, Dalton M, Doll K, Winkel A, Stumpp NS, Stiesch M.	Oral Health Prev Dent	10.3290/j.ohpd.a44938	2020
Transcriptome	Gene expression of bacterial collagenolytic proteases in root caries.	Dame-Teixeira N, Parolo CCF, Maltz M, Rup AG, Devine DA, Do T.	J Oral Microbiol	10.1080/20002297.2018.1424475	2018
Metabolism	Changes in salivary microbiota increase volatile sulfur compounds production in healthy male subjects with academic-related chronic stress.	Nani BD, Lima PO, Marcondes FK, Groppo FC, Rolim GS, Moraes AB, Cogo-Muller K, Franz-Montan M.	PLoS One	10.1371/journal.pone.0173686	2017
Metabolism	Strain dropouts reveal interactions that govern the metabolic output of the gut microbiome.	Wang M, Osborn LJ, Jain S, Meng X, Weakley A, Yan J, Massey WJ, Varadharajan V, Horak A, Banerjee R, Allende DS, Chan ER, Hajjar AM, Wang Z, Dimas A, Zhao A, Nagashima K, Cheng AG, Higginbottom S, Hazen SL, Brown JM, Fischbach MA.	Cell	10.1016/j.cell.2023.05.037	2023
Phylogeny	Identification and Differentiation of Pseudomonas Species in Field Samples Using an rpoD Amplicon Sequencing Methodology.	Lauritsen JG, Hansen ML, Bech PK, Jelsbak L, Gram L, Strube ML.	mSystems	10.1128/msystems.00704-21	2021
	Design, construction, and in vivo augmentation of a complex gut microbiome.	Cheng AG, Ho PY, Aranda-Diaz A, Jain S, Yu FB, Meng X, Wang M, Iakiviak M, Nagashima K, Zhao A, Murugkar P, Patil A, Atabakhsh K, Weakley A, Yan J, Brumbaugh AR, Higginbottom S, Dimas A, Shiver AL, Deutschbauer A, Neff N, Sonnenburg JL, Huang KC, Fischbach MA.	Cell	10.1016/j.cell.2022.08.003	2022
	'Lactomassilus timonensis,' a new anaerobic bacterial species isolated from the milk of a healthy African mother.	Togo AH, Camara A, Konate S, Doumbo OK, Raoult D, Million M.	New Microbes New Infect	10.1016/j.nmni.2017.12.004	2018
Genetics	Complete genome sequence of Solobacterium moorei JCM 10645^T isolated from a human stool sample.	Oshibuchi K, Yang J, Obana N, Fukuda S, Arakawa K.	Microbiol Resour Announc	10.1128/mra.00965-23	2024
Pathogenicity	First case report of bacteremia caused by Solobacterium moorei in China, and literature review.	Liu WJ, Xiao M, Yi J, Li Y, Kudinha T, Xu YC.	BMC Infect Dis	10.1186/s12879-019-4359-7	2019
	Colorectal Cancer Patients Have Four Specific Bacterial Species in Oral and Gut Microbiota in Common-A Metagenomic Comparison with Healthy Subjects.	Uchino Y, Goto Y, Konishi Y, Tanabe K, Toda H, Wada M, Kita Y, Beppu M, Mori S, Hijioka H, Otsuka T, Natsugoe S, Hara E, Sugiura T.	Cancers (Basel)	10.3390/cancers13133332	2021
	Identification of a growth factor required for culturing specific fastidious oral bacteria.	Murugkar P, Dimise E, Stewart E, Viala SN, Clardy J, Dewhirst FE, Lewis K.	J Oral Microbiol	10.1080/20002297.2022.2143651	2023
Enzymology	Solobacterium moorei bacteremia: identification, antimicrobial susceptibility, and clinical characteristics.	Pedersen RM, Holt HM, Justesen US.	J Clin Microbiol	10.1128/jcm.02525-10	2011
Metabolism	Gut bacteria identified in colorectal cancer patients promote tumourigenesis via butyrate secretion.	Okumura S, Konishi Y, Narukawa M, Sugiura Y, Yoshimoto S, Arai Y, Sato S, Yoshida Y, Tsuji S, Uemura K, Wakita M, Matsudaira T, Matsumoto T, Kawamoto S, Takahashi A, Itatani Y, Miki H, Takamatsu M, Obama K, Takeuchi K, Suematsu M, Ohtani N, Fukunaga Y, Ueno M, Sakai Y, Nagayama S, Hara E.	Nat Commun	10.1038/s41467-021-25965-x	2021
Phylogeny	Phylogenic and phenotypic characterization of some Eubacterium-like isolates from human feces: description of Solobacterium moorei Gen. Nov., Sp. Nov.	Kageyama A, Benno Y	Microbiol Immunol	10.1111/j.1348-0421.2000.tb02487.x	2000
Genetics	Genome sequence and description of Traorella massiliensis gen. nov., sp. nov., a new bacterial genus isolated from human left colon.	Bonnet M, Mailhe M, Ricaboni D, Labas N, Richez M, Vitton V, Benezech A, Fournier PE, Million M, Raoult D, Khelaifia S.	New Microbes New Infect	10.1016/j.nmni.2019.100520	2019
Genetics	Lactimicrobium massiliense gen. nov., sp. nov.; Anaerolactibacter massiliensis gen. nov., sp. nov.; Galactobacillus timonensis gen. nov., sp. nov. and Acidipropionibacterium timonense sp. nov. isolated from breast milk from healthy breastfeeding African women.	Togo AH, Diop A, Camara A, Kuete E, Konate S, Brevaut V, Des Robert C, Delerce J, Armstrong N, Roussel Y, Fournier PE, Thera MA, Raoult D, Million M.	New Microbes New Infect	10.1016/j.nmni.2019.100537	2019

References

#16566	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22971
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66793	Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68367	Automatically annotated from API 20A .
#68380	Automatically annotated from API rID32A .
#68382	Automatically annotated from API zym .
#121136	Collection of Institut Pasteur ; Curators of the CIP; CIP 106864
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Solobacterium moorei (DSM 22971, CIP 106864, JCM 10645)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Multimedia

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API zym

API 20A

API rID32A

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_036323475

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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