Name: Catenibacterium mitsuokai RCA14-39
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5366

Type strain:

Species: Catenibacterium mitsuokai

Strain Designation: RCA14-39

Culture col. no.: DSM 15897, CIP 106738, JCM 10609

Strain history: CIP <- 2000, JCM <- Y. Benno RCA14-39

NCBI tax ID(s): 451640 (strain), 100886 (species)

SI-ID 88233

JCM 10609, CIP 106738, DSM 15897, CCUG 48821 A, CCUG 48821 B, CCUG 48886

Other strains from Catenibacterium mitsuokai

C. mitsuokai JCM 10606
C. mitsuokai JCM 10607
C. mitsuokai JCM 10608
C. mitsuokai JCM 10610
C. mitsuokai JCM 10611
C. mitsuokai JCM 31250

Section

Catenibacterium mitsuokai RCA14-39 is an anaerobe, mesophilic, rod-shaped bacterium that was isolated from human faeces.

rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacillota*
	Class	*Erysipelotrichia*
	Order	*Erysipelotrichales*
	Family	*Coprobacillaceae*
	Genus	*Catenibacterium*
	Species	**Catenibacterium mitsuokai**
	Full Scientific Name (LPSN)	Catenibacterium mitsuokai Kageyama and Benno 2000

Information on morphological and physiological properties Morphology

[Ref.: #120977]	Cell shape	rod-shaped

[Ref.: #120977]	Motility	no

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6175]

Culture medium

CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)

[Ref.: #6175]

Culture medium growth

[Ref.: #6175]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6175]

Culture medium composition

expand / minimize

[Ref.: #6175]

Culture medium

PYG MEDIUM (MODIFIED) (DSMZ Medium 104)

[Ref.: #6175]

Culture medium growth

[Ref.: #6175]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6175]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6175]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #6175]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #6175]	Oxygen tolerance	anaerobe
[Ref.: #120977]	Oxygen tolerance	anaerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120977]	esculin ChEBI	-	hydrolysis
[Ref.: #120977]	nitrate ChEBI	-	reduction
[Ref.: #120977]	nitrate ChEBI	+	respiration
[Ref.: #120977]	nitrite ChEBI	-	reduction

	Metabolite production	Metabolite	Production
[Ref.: #120977]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #120977]	amylase	+
[Ref.: #120977]	beta-galactosidase	-	3.2.1.23
[Ref.: #120977]	caseinase	-	3.4.21.50
[Ref.: #120977]	catalase	+	1.11.1.6
[Ref.: #120977]	DNase	-
[Ref.: #120977]	gelatinase	-
[Ref.: #120977]	lecithinase	-
[Ref.: #120977]	lipase	-
[Ref.: #120977]	oxidase	-
[Ref.: #120977]	protease	-
[Ref.: #120977]	tween esterase	-
[Ref.: #120977]	urease	-	3.5.1.5
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6175]	Sample type/isolated from	human faeces
[Ref.: #6175]	Country	Papua New Guinea
[Ref.: #6175]	Country ISO 3 Code	PNG
[Ref.: #6175]	Continent	Australia and Oceania

[Ref.: #67770]	Sample type/isolated from	Papua New Guinea highlanders' faeces

[Ref.: #120977]	Sample type/isolated from	Human, Faeces
[Ref.: #120977]	Country	Papua New Guinea
[Ref.: #120977]	Country ISO 3 Code	PNG
[Ref.: #120977]	Continent	Australia and Oceania
[Ref.: #120977]	Isolation date	1982
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6175]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120977]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6175]	Catenibacterium mitsuokai gene for 16S rRNA, strain:JCM 10609	AB030224	1485	ENA	451640 tax ID
[Ref.: #20218]	Catenibacterium mitsuokai gene for 16S ribosomal RNA, partial sequence	AB910738	1491	ENA	451640 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Catenibacterium mitsuokai DSM 15897	GCA_000173795	contig	GenBank	451640 tax ID
[Ref.: #66792]	Catenibacterium mitsuokai DSM 15897	451640.67	wgs	PATRIC	451640 tax ID	*
[Ref.: #66792]	Catenibacterium mitsuokai DSM 15897	643886110	draft	JGI IMG/M	451640 tax ID	*
[Ref.: #66792]	Catenibacterium mitsuokai DSM 15897	GCA_025148785	complete	GenBank	100886 tax ID	*
[Ref.: #66792]	Catenibacterium mitsuokai strain DSM 15897	100886.347	complete	PATRIC	100886 tax ID	*

[Ref.: #6175]	GC-content	36-39 mol%
[Ref.: #67770]	GC-content	36.6 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Catenibacterium mitsuokai DSM 15897 NCBI: GCA_025148785.1
[Ref.: #69480]	motile	no	92.901	no
[Ref.: #69480]	flagellated	no	95.832	no
[Ref.: #69480]	gram-positive	yes	93.659	no
[Ref.: #69480]	anaerobic	yes	98.936	yes
[Ref.: #69480]	aerobic	no	99.185	yes
[Ref.: #69480]	halophile	no	66.615	no
[Ref.: #69480]	spore-forming	no	87.755	no
[Ref.: #69480]	glucose-ferment	yes	71.297	no
[Ref.: #69480]	thermophile	no	96.982	yes
[Ref.: #69480]	glucose-util	yes	86.416	no

Availability in culture collections External links

[Ref.: #6175]

Culture collection no.

DSM 15897, CIP 106738, JCM 10609

[Ref.: #74856]

SI-ID 88233

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Catenibacterium mitsuokai gen. nov., sp. nov., a gram-positive anaerobic bacterium isolated from human faeces.	Kageyama A, Benno Y	Int J Syst Evol Microbiol	10.1099/00207713-50-4-1595	2000	*

References

#6175

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 15897

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#74856

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID88233.1 )

#120977 Collection of Institut Pasteur ; Curators of the CIP; CIP 106738
* These data were automatically processed and therefore are not curated

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Catenibacterium mitsuokai DSM 15897

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