Enterococcus malodoratus 6 is a microaerophile, mesophilic, Gram-positive prokaryote that was isolated from gouda cheese.
Gram-positive coccus-shaped microaerophile mesophilic genome sequence 16S sequence| @ref 20215 |
|
|
| Domain Bacillati |
| Phylum Bacillota |
| Class Bacilli |
| Order Lactobacillales |
| Family Enterococcaceae |
| Genus Enterococcus |
| Species Enterococcus malodoratus |
| Full scientific name Enterococcus malodoratus (ex Pette 1955) Collins et al. 1984 |
| @ref | Gram stain | Cell shape | Motility | |
|---|---|---|---|---|
| 120762 | positive | coccus-shaped |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 9003 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 9003 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water | ||
| 40505 | MEDIUM 29- Brain heart agar | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |||
| 120762 | CIP Medium 29 | Medium recipe at CIP |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 120762 | NaCl | positive | growth | 6.5 % |
| @ref | Murein short key | Type | |
|---|---|---|---|
| 9003 | A11.31 | A4alpha L-Lys-D-Asp |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68381 | 40585 ChEBI | alpha-cyclodextrin | - | builds acid from | from API rID32STR |
| 68371 | 27613 ChEBI | amygdalin | + | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | + | builds acid from | from API 50CH acid |
| 68381 | 29016 ChEBI | arginine | - | hydrolysis | from API rID32STR |
| 68371 | 17057 ChEBI | cellobiose | + | builds acid from | from API 50CH acid |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68381 | 18333 ChEBI | D-arabitol | - | builds acid from | from API rID32STR |
| 68371 | 18333 ChEBI | D-arabitol | + | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68381 | 16988 ChEBI | D-ribose | + | builds acid from | from API rID32STR |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | + | builds acid from | from API 50CH acid |
| 68381 | 16443 ChEBI | D-tagatose | + | builds acid from | from API rID32STR |
| 68371 | 16443 ChEBI | D-tagatose | + | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 120762 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | + | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 68371 | 17754 ChEBI | glycerol | - | builds acid from | from API 50CH acid |
| 68381 | 28087 ChEBI | glycogen | - | builds acid from | from API rID32STR |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 120762 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68381 | 30849 ChEBI | L-arabinose | - | builds acid from | from API rID32STR |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | + | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | + | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68381 | 17716 ChEBI | lactose | + | builds acid from | from API rID32STR |
| 68371 | 17716 ChEBI | lactose | + | builds acid from | from API 50CH acid |
| 68381 | 17306 ChEBI | maltose | + | builds acid from | from API rID32STR |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68381 | 28053 ChEBI | melibiose | + | builds acid from | from API rID32STR |
| 68371 | 28053 ChEBI | melibiose | + | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | + | builds acid from | from API 50CH acid |
| 68381 | 320055 ChEBI | methyl beta-D-glucopyranoside | + | builds acid from | from API rID32STR |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 120762 | 17632 ChEBI | nitrate | - | reduction | |
| 120762 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68381 | 27941 ChEBI | pullulan | - | builds acid from | from API rID32STR |
| 68371 | 16634 ChEBI | raffinose | + | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | + | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | + | builds acid from | from API 50CH acid |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68381 | 17992 ChEBI | sucrose | + | builds acid from | from API rID32STR |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68381 | 27082 ChEBI | trehalose | + | builds acid from | from API rID32STR |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | + | builds acid from | from API 50CH acid |
| 68381 | 16199 ChEBI | urea | - | hydrolysis | from API rID32STR |
| @ref | Chebi-ID | Metabolite | Production | |
|---|---|---|---|---|
| 68381 | 15688 ChEBI | acetoin | from API rID32STR |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 68381 | Alanyl-Phenylalanyl-Proline arylamidase | + | from API rID32STR | |
| 120762 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68381 | alkaline phosphatase | + | 3.1.3.1 | from API rID32STR |
| 68382 | alkaline phosphatase | - | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68381 | alpha-galactosidase | + | 3.2.1.22 | from API rID32STR |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68381 | arginine dihydrolase | - | 3.5.3.6 | from API rID32STR |
| 120762 | beta-galactosidase | + | 3.2.1.23 | |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 68381 | beta-galactosidase | + | 3.2.1.23 | from API rID32STR |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68381 | beta-glucosidase | + | 3.2.1.21 | from API rID32STR |
| 68381 | beta-glucuronidase | - | 3.2.1.31 | from API rID32STR |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68381 | beta-mannosidase | - | 3.2.1.25 | from API rID32STR |
| 120762 | catalase | - | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 120762 | gamma-glutamyltransferase | - | 2.3.2.2 | |
| 68381 | glycyl tryptophan arylamidase | + | from API rID32STR | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 120762 | lysine decarboxylase | - | 4.1.1.18 | |
| 68381 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API rID32STR |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 120762 | ornithine decarboxylase | - | 4.1.1.17 | |
| 120762 | oxidase | - | ||
| 68381 | pyrrolidonyl arylamidase | + | 3.4.19.3 | from API rID32STR |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68381 | urease | - | 3.5.1.5 | from API rID32STR |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 120762 | not determinedn.d. | - | - | - | - | + | - | - | + | - | + | + | + | + | + | + | - | - | + | + | + | - | + | + | + | + | + | + | + | + | + | + | + | - | - | + | - | - | +/- | + | + | - | + | - | - | + | + | + | - | +/- |
| @ref | ADH (Arg) | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | Acid from alpha-cyclodextrinCDEX | Acetoin production (Voges Proskauer test)VP | Alanyl-Phenylalanyl-Proline arylamidaseAPPA | beta GAL | Pyrrolidonyl arylamidasePyrA | N-Acetyl-glucosaminidasebeta NAG | Glycyl-tryptophan arylamidaseGTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Acidification of methyl beta-D-glucopyranosideMbeta DG | TAG | beta MAN | URE | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9003 | - | + | - | - | + | + | + | +/- | +/- | + | + | +/- | + | - | - | - | + | + | + | + | + | + | +/- | - | - | + | + | +/- | + | + | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | Ente_malo_ATCC43197_V2 assembly for Enterococcus malodoratus ATCC 43197 | scaffold | 1158601 | 71.7 | ||||
| 67770 | 43366_G01 assembly for Enterococcus malodoratus NCTC12365 | contig | 71451 | 71.65 | ||||
| 67770 | Ente_malo_ATCC43197_V1 assembly for Enterococcus malodoratus ATCC 43197 | scaffold | 1158601 | 65.01 | ||||
| 67770 | ASM188602v1 assembly for Enterococcus malodoratus DSM 20681 | scaffold | 71451 | 45.73 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Enterococcus malodoratus 16S ribosomal RNA gene, partial sequence | AF061012 | 1500 | 71451 | ||
| 20218 | Enterococcus malodoratus strain ATCC 43197 16S ribosomal RNA gene, partial sequence | KC510237 | 815 | 71451 | ||
| 9003 | Enterococcus malodoratus 16S rRNA gene | Y18339 | 1461 | 71451 | ||
| 67770 | Enterococcus malodoratus 16S rRNA gene, strain LMG 10747 | AJ301835 | 1701 | 71451 | ||
| 67770 | Enterococcus malodoratus gene for 16S ribosomal RNA, partial sequence, strain: JCM 8730 | LC097068 | 1497 | 71451 | ||
| 124043 | Enterococcus malodoratus gene for 16S rRNA, partial sequence, strain: NBRC 100489. | AB681187 | 1484 | 71451 | ||
| 124043 | E.malodoratus 16S rRNA gene, partial (strain CCUG 30572) | Y12911 | 366 | 71451 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | facultative anaerobe | 97.90 | no |
| 125439 | gram_stain | BacteriaNetⓘ | positive | 78.10 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 57.40 | no |
| 125439 | spore_formation | BacteriaNetⓘ | yes | 64.00 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | yes | 88.35 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 86.79 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 74.25 | no |
| 125438 | aerobic | aerobicⓘ | no | 90.98 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 97.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 86.90 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Enterococcus burkinafasonensis sp. nov. isolated from human gut microbiota. | Gouba N, Yimagou EK, Hassani Y, Drancourt M, Fellag M, Mbogning Fonkou MD. | New Microbes New Infect | 10.1016/j.nmni.2020.100702 | 2020 | |
| Lighting the Path: Raman Spectroscopy's Journey Through the Microbial Maze. | Salbreiter M, Frempong SB, Even S, Wagenhaus A, Girnus S, Rosch P, Popp J. | Molecules | 10.3390/molecules29245956 | 2024 | ||
| Stimulation of monokine production by lipoteichoic acids. | Bhakdi S, Klonisch T, Nuber P, Fischer W. | Infect Immun | 10.1128/iai.59.12.4614-4620.1991 | 1991 | ||
| Diversity of domain V of 23S rRNA gene sequence in different Enterococcus species. | Tsiodras S, Gold HS, Coakley EP, Wennersten C, Moellering RC, Eliopoulos GM. | J Clin Microbiol | 10.1128/jcm.38.11.3991-3993.2000 | 2000 | ||
| The Glutaminase-Dependent Acid Resistance System: Qualitative and Quantitative Assays and Analysis of Its Distribution in Enteric Bacteria. | Pennacchietti E, D'Alonzo C, Freddi L, Occhialini A, De Biase D. | Front Microbiol | 10.3389/fmicb.2018.02869 | 2018 | ||
| Phylogeny | Species identification of enterococci via intergenic ribosomal PCR. | Tyrrell GJ, Bethune RN, Willey B, Low DE. | J Clin Microbiol | 10.1128/jcm.35.5.1054-1060.1997 | 1997 | |
| Phylogeny | Sequencing the gene encoding manganese-dependent superoxide dismutase for rapid species identification of enterococci. | Poyart C, Quesnes G, Trieu-Cuot P. | J Clin Microbiol | 10.1128/jcm.38.1.415-418.2000 | 2000 | |
| Phylogeny | Identification of Enterococcus species and phenotypically similar Lactococcus and Vagococcus species by reverse checkerboard hybridization to chaperonin 60 gene sequences. | Goh SH, Facklam RR, Chang M, Hill JE, Tyrrell GJ, Burns EC, Chan D, He C, Rahim T, Shaw C, Hemmingsen SM. | J Clin Microbiol | 10.1128/jcm.38.11.3953-3959.2000 | 2000 | |
| Evidence for horizontal gene transfer in evolution of elongation factor Tu in enterococci. | Ke D, Boissinot M, Huletsky A, Picard FJ, Frenette J, Ouellette M, Roy PH, Bergeron MG. | J Bacteriol | 10.1128/jb.182.24.6913-6920.2000 | 2000 | ||
| Enzymology | Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples. | Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG. | Appl Environ Microbiol | 10.1128/aem.02337-10 | 2011 | |
| Metabolism | A dual role of the transcriptional regulator TstR provides insights into cyanide detoxification in Lactobacillus brevis. | Pagliai FA, Murdoch CC, Brown SM, Gonzalez CF, Lorca GL. | Mol Microbiol | 10.1111/mmi.12598 | 2014 | |
| Phylogeny | Species identities of enterococci isolated from clinical specimens. | Ruoff KL, de la Maza L, Murtagh MJ, Spargo JD, Ferraro MJ. | J Clin Microbiol | 10.1128/jcm.28.3.435-437.1990 | 1990 | |
| Analysis of genes encoding D-alanine-D-alanine ligase-related enzymes in Enterococcus casseliflavus and Enterococcus flavescens. | Navarro F, Courvalin P. | Antimicrob Agents Chemother | 10.1128/aac.38.8.1788 | 1994 | ||
| Compilation of small ribosomal subunit RNA structures. | Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R. | Nucleic Acids Res | 10.1093/nar/21.13.3025 | 1993 | ||
| Production of d-Branched-Chain Amino Acids by Lactic Acid Bacteria Carrying Homologs to Isoleucine 2-Epimerase of Lactobacillus buchneri. | Mutaguchi Y, Kasuga K, Kojima I. | Front Microbiol | 10.3389/fmicb.2018.01540 | 2018 |
| #9003 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 20681 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40505 | ; Curators of the CIP; |
| #50160 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30572 |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68381 | Automatically annotated from API rID32STR . |
| #68382 | Automatically annotated from API zym . |
| #120762 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103012 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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