Cronobacter malonaticus E825 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from breast abscess.
Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Cronobacter |
| Species Cronobacter malonaticus |
| Full scientific name Cronobacter malonaticus Iversen et al. 2008 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 7663 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | Medium recipe at MediaDive | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base | ||
| 7663 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | Medium recipe at MediaDive | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
| @ref | Ability | Type | PH | PH range | |
|---|---|---|---|---|---|
| 32494 | positive | growth | 05-10 | alkaliphile |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 96.6 |
| @ref | Salt | Growth | Tested relation | Concentration | |
|---|---|---|---|---|---|
| 32494 | NaCl | positive | growth | <7 % |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | + | fermentation | from API 20E |
| 68368 | 29016 ChEBI | arginine | + | hydrolysis | from API 20E |
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 32494 | 4853 ChEBI | esculin | + | hydrolysis | |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 32494 | 15792 ChEBI | malonate | + | carbon source | |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 32494 | 17632 ChEBI | nitrate | + | reduction | |
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 32494 | 17148 ChEBI | putrescine | + | carbon source | |
| 68368 | 30911 ChEBI | sorbitol | - | fermentation | from API 20E |
| 68368 | 17992 ChEBI | sucrose | + | fermentation | from API 20E |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68368 | arginine dihydrolase | + | 3.5.3.6 | from API 20E |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 32494 | catalase | + | 1.11.1.6 | |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68368 | gelatinase | - | from API 20E | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 7663 | + | + | - | + | + | - | - | - | - | + | - | + | + | - | - | + | + | + | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host Body-Site | #Other | #Abscess | |
| #Host Body-Site | #Other | #Thoracic segment |
Global distribution of 16S sequence EF059881 (>99% sequence identity) for Cronobacter from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM127721v2 assembly for Cronobacter malonaticus LMG 23826 | complete | 1159491 | 97.97 | ||||
| 66792 | Cronobacter malonaticus LMG 23826 | complete | 1159491 | 97.8 | ||||
| 124043 | ASM4122287v1 assembly for Cronobacter malonaticus LMG 23826 | complete | 1159491 | 93.1 | ||||
| 66792 | Cmal825 final contigs assembly for Cronobacter malonaticus LMG 23826 | contig | 1159491 | 52.99 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 92.60 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 99.20 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 59.50 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 96.60 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.50 | yes |
| 125438 | anaerobic | anaerobicⓘ | no | 96.02 | no |
| 125438 | aerobic | aerobicⓘ | no | 60.55 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 88.80 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.30 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 75.09 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| A Colorimetric Strategy Based on Aptamer-Catalyzed Hairpin Assembly for the On-Site Detection of Salmonella typhimurium in Milk. | Chen S, Zong X, Zheng J, Zhang J, Zhou M, Chen Q, Man C, Jiang Y. | Foods | 10.3390/foods10112539 | 2021 | ||
| Enzymology | Immunogold Nanoparticles for Rapid Plasmonic Detection of C. sakazakii. | Aly MA, Domig KJ, Kneifel W, Reimhult E. | Sensors (Basel) | 10.3390/s18072028 | 2018 | |
| Probiotics and Fever Duration in Children With Upper Respiratory Tract Infections: A Randomized Clinical Trial. | Bettocchi S, Comotti A, Elli M, De Cosmi V, Berti C, Alberti I, Mazzocchi A, Rosazza C, Agostoni C, Milani GP. | JAMA Netw Open | 10.1001/jamanetworkopen.2025.0669 | 2025 | ||
| In-depth rheological characterization of genetically modified xanthan-variants | Gansbiller M, Schmid J, Sieber V. | Carbohydrate polymers. | 2019 | |||
| In-depth rheological characterization of genetically modified xanthan-variants. | Gansbiller M, Schmid J, Sieber V. | Carbohydr Polym | 10.1016/j.carbpol.2019.02.055 | 2019 | ||
| Temperature-Sensitive Lipids Reveal Intraspecific Diversity in Bacteria Isolated from an Ancient Antarctic Microbial Mat. | Lezcano MA, Carrizo D, Lominchar MA, Sanchez-Garcia L, Quesada A, Parro V. | Microb Ecol | 10.1007/s00248-025-02583-4 | 2025 | ||
| Genetics | Comparative Genomics Reveals Evidence of the Genome Reduction and Metabolic Potentials of Aliineobacillus hadale Isolated from Challenger Deep Sediment of the Mariana Trench. | Yang S, Liu J, Liu Y, Wu W, Wang J, Wei Y. | Microorganisms | 10.3390/microorganisms13010132 | 2025 | |
| Genetics | Biofertilizer and biocontrol properties of Stenotrophomonas maltophilia BCM emphasize its potential application for sustainable agriculture. | Sharma P, Pandey R, Chauhan NS. | Front Plant Sci | 10.3389/fpls.2024.1364807 | 2024 | |
| Brown Macroalgae (Phaeophyceae): A Valuable Reservoir of Antimicrobial Compounds on Northern Coast of Spain. | Rubino S, Peteiro C, Aymerich T, Hortos M. | Mar Drugs | 10.3390/md20120775 | 2022 | ||
| Draft Genome Sequence of the Xanthan Producer Xanthomonas campestris LMG 8031. | Schmid J, Huptas C, Wenning M. | Genome Announc | 10.1128/genomea.01069-16 | 2016 | ||
| Complete Genome Sequence of the Arcobacter bivalviorum Type Strain LMG 26154. | Miller WG, Yee E, Bono JL. | Microbiol Resour Announc | 10.1128/mra.01076-18 | 2018 | ||
| Genetics | High genomic plasticity and unique features of Xanthomonas translucens pv. graminis revealed through comparative analysis of complete genome sequences. | Goettelmann F, Koebnik R, Roman-Reyna V, Studer B, Kolliker R. | BMC Genomics | 10.1186/s12864-023-09855-8 | 2023 | |
| Beneficial Bacteria and Plant Extracts Promote Honey Bee Health and Reduce Nosema ceranae Infection. | Garrido PM, Porrini MP, Alberoni D, Baffoni L, Scott D, Mifsud D, Eguaras MJ, Di Gioia D. | Probiotics Antimicrob Proteins | 10.1007/s12602-022-10025-7 | 2024 | ||
| Genetics | Analysis of the Molecular Diversity Among Cronobacter Species Isolated From Filth Flies Using Targeted PCR, Pan Genomic DNA Microarray, and Whole Genome Sequencing Analyses. | Jang H, Chase HR, Gangiredla J, Grim CJ, Patel IR, Kothary MH, Jackson SA, Mammel MK, Carter L, Negrete F, Finkelstein S, Weinstein L, Yan Q, Iversen C, Pagotto F, Stephan R, Lehner A, Eshwar AK, Fanning S, Farber J, Gopinath GR, Tall BD, Pava-Ripoll M. | Front Microbiol | 10.3389/fmicb.2020.561204 | 2020 | |
| The Secretion of Toxins and Other Exoproteins of Cronobacter: Role in Virulence, Adaption, and Persistence. | Jang H, Gopinath GR, Eshwar A, Srikumar S, Nguyen S, Gangiredla J, Patel IR, Finkelstein SB, Negrete F, Woo J, Lee Y, Fanning S, Stephan R, Tall BD, Lehner A. | Microorganisms | 10.3390/microorganisms8020229 | 2020 | ||
| Genetics | Pan-genome analysis of the emerging foodborne pathogen Cronobacter spp. suggests a species-level bidirectional divergence driven by niche adaptation. | Grim CJ, Kotewicz ML, Power KA, Gopinath G, Franco AA, Jarvis KG, Yan QQ, Jackson SA, Sathyamoorthy V, Hu L, Pagotto F, Iversen C, Lehner A, Stephan R, Fanning S, Tall BD. | BMC Genomics | 10.1186/1471-2164-14-366 | 2013 | |
| Detection of Cronobacter Genus in Powdered Infant Formula by Enzyme-linked Immunosorbent Assay Using Anti-Cronobacter Antibody. | Song X, Shukla S, Lee G, Park S, Kim M. | Front Microbiol | 10.3389/fmicb.2016.01124 | 2016 | ||
| Knockout of a highly GC-rich gene in Burkholderia pyrrocinia by recombineering with freeze-thawing transformation. | Chen F, Ye J, Liu W, Chio C, Wang W, Qin W. | Mol Plant Pathol | 10.1111/mpp.13058 | 2021 | ||
| Genetics | Phylogenomic Reconstruction and Metabolic Potential of the Genus Aminobacter. | Artuso I, Turrini P, Pirolo M, Lugli GA, Ventura M, Visca P. | Microorganisms | 10.3390/microorganisms9061332 | 2021 | |
| Diversity of O Antigens within the Genus Cronobacter: from Disorder to Order. | Blazkova M, Javurkova B, Vlach J, Goselova S, Karamonova L, Ogrodzki P, Forsythe S, Fukal L. | Appl Environ Microbiol | 10.1128/aem.00277-15 | 2015 | ||
| Analysis and Characterization of Proteins Associated with Outer Membrane Vesicles Secreted by Cronobacter spp. | Kothary MH, Gopinath GR, Gangiredla J, Rallabhandi PV, Harrison LM, Yan QQ, Chase HR, Lee B, Park E, Yoo Y, Chung T, Finkelstein SB, Negrete FJ, Patel IR, Carter L, Sathyamoorthy V, Fanning S, Tall BD. | Front Microbiol | 10.3389/fmicb.2017.00134 | 2017 | ||
| Whole Genome Analyses Suggests that Burkholderia sensu lato Contains Two Additional Novel Genera (Mycetohabitans gen. nov., and Trinickia gen. nov.): Implications for the Evolution of Diazotrophy and Nodulation in the Burkholderiaceae. | Estrada-de Los Santos P, Palmer M, Chavez-Ramirez B, Beukes C, Steenkamp ET, Briscoe L, Khan N, Maluk M, Lafos M, Humm E, Arrabit M, Crook M, Gross E, Simon MF, Dos Reis Junior FB, Whitman WB, Shapiro N, Poole PS, Hirsch AM, Venter SN, James EK. | Genes (Basel) | 10.3390/genes9080389 | 2018 | ||
| Phylogeny | Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics. | Lugli GA, Milani C, Turroni F, Duranti S, Ferrario C, Viappiani A, Mancabelli L, Mangifesta M, Taminiau B, Delcenserie V, van Sinderen D, Ventura M. | Appl Environ Microbiol | 10.1128/aem.02004-14 | 2014 | |
| Genetics | Genome Sequence of the Thermotolerant Foodborne Pathogen Salmonella enterica Serovar Senftenberg ATCC 43845 and Phylogenetic Analysis of Loci Encoding Increased Protein Quality Control Mechanisms. | Nguyen SV, Harhay GP, Bono JL, Smith TP, Harhay DM. | mSystems | 10.1128/msystems.00190-16 | 2017 | |
| Metabolism | Hitting with a BAM: Selective Killing by Lectin-Like Bacteriocins. | Ghequire MGK, Swings T, Michiels J, Buchanan SK, De Mot R. | mBio | 10.1128/mbio.02138-17 | 2018 | |
| Enzymology | Low rates of Pseudomonas aeruginosa misidentification in isolates from cystic fibrosis patients. | Kidd TJ, Ramsay KA, Hu H, Bye PT, Elkins MR, Grimwood K, Harbour C, Marks GB, Nissen MD, Robinson PJ, Rose BR, Sloots TP, Wainwright CE, Bell SC, ACPinCF Investigators. | J Clin Microbiol | 10.1128/jcm.00014-09 | 2009 | |
| Metabolism | Flagella from five Cronobacter species induce pro-inflammatory cytokines in macrophage derivatives from human monocytes. | Cruz-Cordova A, Rocha-Ramirez LM, Ochoa SA, Gonzalez-Pedrajo B, Espinosa N, Eslava C, Hernandez-Chinas U, Mendoza-Hernandez G, Rodriguez-Leviz A, Valencia-Mayoral P, Sadowinski-Pine S, Hernandez-Castro R, Estrada-Garcia I, Munoz-Hernandez O, Rosas I, Xicohtencatl-Cortes J. | PLoS One | 10.1371/journal.pone.0052091 | 2012 | |
| Genetics | Complete genome sequence and phenotype microarray analysis of Cronobacter sakazakii SP291: a persistent isolate cultured from a powdered infant formula production facility. | Yan Q, Power KA, Cooney S, Fox E, Gopinath GR, Grim CJ, Tall BD, McCusker MP, Fanning S. | Front Microbiol | 10.3389/fmicb.2013.00256 | 2013 | |
| Performances and microbial features of an aerobic packed-bed biofilm reactor developed to post-treat an olive mill effluent from an anaerobic GAC reactor. | Bertin L, Colao MC, Ruzzi M, Marchetti L, Fava F. | Microb Cell Fact | 10.1186/1475-2859-5-16 | 2006 | ||
| Metabolism | Yersiniabactin production by Pseudomonas syringae and Escherichia coli, and description of a second yersiniabactin locus evolutionary group. | Bultreys A, Gheysen I, de Hoffmann E. | Appl Environ Microbiol | 10.1128/aem.00119-06 | 2006 | |
| Phylogeny | Molecular analysis of the Enterobacter sakazakii O-antigen gene locus. | Mullane N, O'Gaora P, Nally JE, Iversen C, Whyte P, Wall PG, Fanning S. | Appl Environ Microbiol | 10.1128/aem.02302-07 | 2008 | |
| Isolation and Characterization of Paracoccus maritimus sp. nov., from Intertidal Sediment. | Yu L, Xu G, Wei S, Lai Q, Shao Z. | Curr Microbiol | 10.1007/s00284-024-03637-5 | 2024 | ||
| Neobacillus sedimentimangrovi sp. nov., a Thermophilic Bacterium Isolated from Mangrove Sediment. | Tang R, Zhang Q, Narsing Rao MP, Liu GH, Che JM, Lei M, Liu B, Li WJ, Zhou SG. | Curr Microbiol | 10.1007/s00284-021-02360-9 | 2021 | ||
| Phylogeny | Paracoccus pueri sp. nov., isolated from Pu'er tea. | Wang YS, Yan ZF, Lin P, Gao W, Yi TH. | Antonie Van Leeuwenhoek | 10.1007/s10482-018-1041-9 | 2018 | |
| Phylogeny | Spongiimicrobium salis gen. nov., sp. nov., a bacterium of the family Flavobacteriaceae isolated from a marine sponge. | Yoon J, Adachi K, Kasai H. | Arch Microbiol | 10.1007/s00203-016-1227-3 | 2016 | |
| Phylogeny | Cronobacter condimenti sp. nov., isolated from spiced meat, and Cronobacter universalis sp. nov., a species designation for Cronobacter sp. genomospecies 1, recovered from a leg infection, water and food ingredients. | Joseph S, Cetinkaya E, Drahovska H, Levican A, Figueras MJ, Forsythe SJ. | Int J Syst Evol Microbiol | 10.1099/ijs.0.032292-0 | 2012 | |
| Metabolism | Polycyclic aromatic hydrocarbon degradation of phytoplankton-associated Arenibacter spp. and description of Arenibacter algicola sp. nov., an aromatic hydrocarbon-degrading bacterium. | Gutierrez T, Rhodes G, Mishamandani S, Berry D, Whitman WB, Nichols PD, Semple KT, Aitken MD. | Appl Environ Microbiol | 10.1128/aem.03104-13 | 2014 | |
| Phylogeny | Cronobacter gen. nov., a new genus to accommodate the biogroups of Enterobacter sakazakii, and proposal of Cronobacter sakazakii gen. nov., comb. nov., Cronobacter malonaticus sp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov., Cronobacter genomospecies 1, and of three subspecies, Cronobacter dublinensis subsp. dublinensis subsp. nov., Cronobacter dublinensis subsp. lausannensis subsp. nov. and Cronobacter dublinensis subsp. lactaridi subsp. nov. | Iversen C, Mullane N, McCardell B, Tall BD, Lehner A, Fanning S, Stephan R, Joosten H | Int J Syst Evol Microbiol | 10.1099/ijs.0.65577-0 | 2008 |
| #7663 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18702 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #28714 | IJSEM 1442 2008 ( DOI 10.1099/ijs.0.65577-0 , PubMed 18523192 ) |
| #32494 | Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28714 |
| #60835 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 56035 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68368 | Automatically annotated from API 20E . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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