Yersinia pekkanenii ÅYV7.1KOH2 | Type strain | DSM 22769, LMG 25369, CCUG 60991

Strain identifier

BacDive ID: 5232

Type strain:

Species: Yersinia pekkanenii

Strain Designation: ÅYV7.1KOH2

Culture col. no.: DSM 22769, LMG 25369, CCUG 60991

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #16508]	Domain	Bacteria
[Ref.: #16508]	Phylum	Proteobacteria
[Ref.: #16508]	Class	Gammaproteobacteria
[Ref.: #16508]	Order	Enterobacteriales, not validated
[Ref.: #16508]	Family	Yersiniaceae
[Ref.: #16508]	Genus	Yersinia
[Ref.: #16508]	Species	Yersinia pekkanenii
[Ref.: #16508]	Full Scientific Name	Yersinia pekkanenii Murros-Kontiainen et al. 2011
[Ref.: #16508]	Strain Designation	ÅYV7.1KOH2
[Ref.: #16508]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	25-03-2019 (DD-MM-YYYY)
[Ref.: #20215]	Genus	Yersinia	gen. nov. (VL)	Int. J. Syst. Bacteriol. 42:327
[Ref.: #20215]	Species	Yersinia pekkanenii	sp. nov. (VP)	Int. J. Syst. Evol. Microbiol. 61:2363*
[Ref.: #20215]	Full Scientific Name	Yersinia pekkanenii Murros-Kontiainen et al. 2011

Information on morphological and physiological propertiesMorphology and physiology

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #16508]	5462	+	-	-	-	-	-	+	-	-	-	-	+	+	-	-	-	-	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

[Ref.: #62512]

Oxygen tolerance

aerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #16508]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535), 28°C

[Ref.: #16508]

Culture medium growth

[Ref.: #16508]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #37684]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37684]

Culture medium growth

[Ref.: #37684]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16508]	growth	28 ̊C
[Ref.: #37684]	growth	30 ̊C
[Ref.: #62512]	growth	30 ̊C

[Ref.: #16508]	Temperature range	mesophilic
[Ref.: #37684]	Temperature range	mesophilic
[Ref.: #62512]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #16508]

Sample type/isolated from

water

[Ref.: #16508]

Country

Finland

[Ref.: #16508]

Continent

Europe

[Ref.: #62512]

Sample type/isolated from

Lettuce

[Ref.: #62512]

Sampling date

2000

[Ref.: #62512]

Country

Finland

[Ref.: #62512]

Continent

Europe

Isolation sources categories

#Environmental

#Aquatic

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #16508]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

[Ref.: #16508]

GC-content

47.5 mol%

fluorimetric

Sequence information:

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #16508]	GenBank Direct submission	Yersinia pekkanenii DSM 22769 strain AYV7.1KOH2 glutamine synthetase (glnA) gene, partial cds	GQ451993		492	687899
[Ref.: #16508]	GenBank Direct submission	Yersinia pekkanenii DSM 22769 strain AYV7.1KOH2 DNA gyrase subunit B (gyrB) gene, partial cds	GQ451996		502	687899
[Ref.: #16508]	GenBank Direct submission	Yersinia pekkanenii DSM 22769 strain AYV7.1KOH2 Hsp60 (hsp60) gene, partial cds	GQ451999		523	687899
[Ref.: #16508]	GenBank Direct submission	Yersinia pekkanenii DSM 22769 strain AYV7.1KOH2 16S ribosomal RNA gene, partial sequence	GQ451990	16S	1451	687899
[Ref.: #16508]	GenBank Direct submission	Yersinia pekkanenii DSM 22769 strain AYV7.1KOH2 recombination protein A (recA) gene, partial cds	GQ452002		512	687899

Availability in culture collectionsStrain availability

[Ref.: #16508]

Culture collection no.

DSM 22769, LMG 25369, CCUG 60991

[Ref.: #16508]

Strain history

<- A. Murros-Kontiainen, Faculty Veterinary Medicine, Univ. Helsinki, Finland; ÅYV7.1KOH2 <- T. Niskanen

[Ref.: #20218]

Associated Passport(s) in StrainInfo

867488, 867489

References

#16508

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22769

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37684 ; Curators of the CIP;
#62512 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60991
* These References are textmined

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