Name: Thermocrinis ruber OC 14/7/2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 523

Type strain:

Species: Thermocrinis ruber

Strain Designation: OC 14/7/2, OC 1/4

Culture col. no.: DSM 23557

Strain history: <- R. Wirth, Univ. Regensburg, Germany; OC 1/4 (the designation OC 14/7/2 has also been used but refers to the location of the strain in the liquid nitrogen tank in Regensburg) <- R. Huber, Univ. Regensburg, Germany

NCBI tax ID(s): 75906 (species)

SI-ID 404916

DSM 23557

Section

Thermocrinis ruber OC 14/7/2 is an anaerobe, spore-forming, hyperthermophilic bacterium that was isolated from Octopus Spring.

motile
spore-forming
anaerobe
hyperthermophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Aquificota*
	Class	*Aquificia*
	Order	*Aquificales*
	Family	*Aquificaceae*
	Genus	*Thermocrinis*
	Species	**Thermocrinis ruber**
	Full Scientific Name (LPSN)	Thermocrinis ruber Huber et al. 1999

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #69480]	Motility	yes Confidence in %91.879

Information on culture and growth conditions Culture and growth conditions

[Ref.: #17283]

Culture medium

OS MEDIUM (DSMZ Medium 887)

[Ref.: #17283]

Culture medium growth

[Ref.: #17283]

Culture medium link

Medium recipe at MediaDive

[Ref.: #17283]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #17283]			growth	80 °C

[Ref.: #17283]	Temperature range	hyperthermophilic
[Ref.: #69480]	Temperature range	thermophilic Confidence in %99.999

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69480]

Oxygen tolerance

anaerobe Confidence in %98.306

[Ref.: #69481]	Ability of spore formation	yes Confidence in %98
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.904

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #17283]	Sample type/isolated from	Octopus Spring
[Ref.: #17283]	Geographic location (country and/or sea, region)	Yellowstone National Park
[Ref.: #17283]	Country	USA
[Ref.: #17283]	Country ISO 3 Code	USA
[Ref.: #17283]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Spring

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LN681406 (>99% sequence identity) for Thermocrinis ruber subclade from Microbeatlas

Aquatic Samples	127
Soil Samples	4
Animal Samples	2
Plant Samples
Total Samples	133

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #17283]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #17283]	Thermocrinis ruber partial 16S rRNA gene, strain DSM 23557	LN681406	1511	ENA	75906 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Thermocrinis ruber DSM 23557	GCA_000512735	complete	GenBank	75906 tax ID	*
[Ref.: #66792]	Thermocrinis ruber strain DSM 23557	75906.12	complete	PATRIC	75906 tax ID	*
[Ref.: #66792]	Thermocrinis ruber DSM 23557	2512875013	complete	JGI IMG/M	75906 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Thermocrinis ruber DSM 23557 NCBI: GCA_000512735.1
[Ref.: #69481]	spore-forming	yes	98	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Thermocrinis ruber DSM 23557 NCBI: GCA_000512735.1
[Ref.: #69480]	motile	yes	89.583	no
[Ref.: #69480]	flagellated	no	89.202	no
[Ref.: #69480]	gram-positive	no	99.363	no
[Ref.: #69480]	anaerobic	yes	54.01	no
[Ref.: #69480]	halophile	no	85.862	no
[Ref.: #69480]	spore-forming	no	96.19	no
[Ref.: #69480]	thermophile	yes	100	yes
[Ref.: #69480]	glucose-util	yes	59.049	no
[Ref.: #69480]	aerobic	no	95.71	no
[Ref.: #69480]	glucose-ferment	no	87.957	no

Availability in culture collections External links

[Ref.: #17283]

Culture collection no.

DSM 23557

[Ref.: #70201]

SI-ID 404916

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Chemolithotrophic growth of the aerobic hyperthermophilic bacterium Thermocrinis ruber OC 14/7/2 on monothioarsenate and arsenite.	Hartig C, Lohmayer R, Kolb S, Horn MA, Inskeep WP, Planer-Friedrich B	FEMS Microbiol Ecol	10.1111/1574-6941.12431	2014	*
Phylogeny	Recognition of the unsuitability of DSM 12173 as the deposited type strain of Thermocrinis ruber Huber et al. 1999, recognition of DSM 23557 as an authentic sub-culture of strain OC 1/4, the nomenclatural type of Thermocrinis ruber Huber et al. 1999 and an emended description of Thermocrinis ruber Huber et al. 1999.	Eder W, Tindall BJ, Huber H, Peplies J, Wirth R	Arch Microbiol	10.1007/s00203-020-01850-x	2020	*
Phylogeny	Thermocrinis minervae sp. nov., a hydrogen- and sulfur-oxidizing, thermophilic member of the Aquificales from a Costa Rican terrestrial hot spring.	Caldwell SL, Liu Y, Ferrera I, Beveridge T, Reysenbach AL	Int J Syst Evol Microbiol	10.1099/ijs.0.010496-0	2009	*
Phylogeny	Thermocrinis ruber gen. nov., sp. nov., A pink-filament-forming hyperthermophilic bacterium isolated from yellowstone national park	Huber R, Eder W, Heldwein S, Wanner G, Huber H, Rachel R, Stetter KO	Appl Environ Microbiol	10.1128/AEM.64.10.3576-3583.1998	1998	*

References

#17283

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23557

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70201

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID404916.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Thermocrinis ruber in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Thermocrinis ruber DSM 23557

Thermocrinis ruber DSM 23557

Change proposal

Change proposal