Name: Yersinia mollaretii DSM 18520
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5225

Type strain:

Species: Yersinia mollaretii

Culture col. no.: DSM 18520, ATCC 43969, CCUG 26331, CDC 2465-87, CIP 103324, CNY 7263

Strain history: CIP <- 1989, H.H. Mollaret, Inst. Pasteur, Paris, France: strain CNY 7263

NCBI tax ID(s): 349967 (strain), 33060 (species)

SI-ID 42157

ATCC 43969, CCUG 26331, CIP 103324, CCM 4208, DSM 18520

Other strains from Yersinia mollaretii

Y. mollaretii CIP 104888, CNY 24084
Y. mollaretii CIP 103328, CNY 19795
Y. mollaretii CCUG 26536

Section

Yersinia mollaretii DSM 18520 is a mesophilic, motile bacterium that was isolated from soil.

motile
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Yersiniaceae*
	Genus	*Yersinia*
	Species	**Yersinia mollaretii**
	Full Scientific Name (LPSN)	Yersinia mollaretii Wauters et al. 1988

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.957

[Ref.: #69480]	Motility	yes Confidence in %98.708

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7573]

Culture medium

BHI MEDIUM (DSMZ Medium 215)

[Ref.: #7573]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

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Culture medium composition

expand / minimize

[Ref.: #7573]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #7573]

Culture medium growth

[Ref.: #7573]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7573]

Culture medium composition

expand / minimize

[Ref.: #34243]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #34243]

Culture medium growth

[Ref.: #34243]

Culture medium composition

expand / minimize

[Ref.: #121003]

Culture medium

CIP Medium 3

[Ref.: #121003]

Culture medium growth

[Ref.: #121003]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #121003]

Culture medium

CIP Medium 72

[Ref.: #121003]

Culture medium growth

[Ref.: #121003]

Culture medium link

Medium recipe provided by DSMZ

	Temperatures	Kind of temperature		Temperature
[Ref.: #7573]			growth	28 °C
[Ref.: #34243]			growth	30 °C

[Ref.: #7573]	Temperature range	mesophilic
[Ref.: #34243]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.647

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	no	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #7573]	17962	+	-	-	+	+	-	+	-	-	-	-	+	+	-	+	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7573]	Sample type/isolated from	soil
[Ref.: #7573]	Country	USA
[Ref.: #7573]	Country ISO 3 Code	USA
[Ref.: #7573]	Continent	North America

[Ref.: #48415]	Sample type/isolated from	Soil
[Ref.: #48415]	Country	USA
[Ref.: #48415]	Country ISO 3 Code	USA
[Ref.: #48415]	Continent	North America

[Ref.: #121003]	Sample type/isolated from	Environment, Soil
[Ref.: #121003]	Country	United States of America
[Ref.: #121003]	Country ISO 3 Code	USA
[Ref.: #121003]	Continent	North America
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Soil

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7573]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121003]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7573]	Yersinia mollaretii 16S ribosomal RNA gene, partial sequence	AF366382	1461	ENA	349967 tax ID
[Ref.: #20218]	Yersinia mollaretii strain CCUG 26331 16S ribosomal RNA gene, partial sequence	EF179124	1461	ENA	33060 tax ID	*
[Ref.: #20218]	Yersinia mollaretii strain ATCC 43969 16S ribosomal RNA gene, partial sequence	AY332837	458	ENA	349967 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Yersinia mollaretii ATCC 43969	GCA_013282725	complete	GenBank	349967 tax ID	*
[Ref.: #66792]	Yersinia mollaretii ATCC 43969	GCA_000167995	contig	GenBank	349967 tax ID	*
[Ref.: #66792]	Yersinia mollaretii ATCC 43969	349967.4	wgs	PATRIC	349967 tax ID	*
[Ref.: #66792]	Yersinia mollaretii ATCC 43969	349967.11	complete	PATRIC	349967 tax ID	*
[Ref.: #66792]	Yersinia mollaretii ATCC 43969	638341241	draft	JGI IMG/M	349967 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Yersinia mollaretii ATCC 43969 ATCC 43969 NCBI: GCA_013282725.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Yersinia mollaretii ATCC 43969 ATCC 43969 NCBI: GCA_013282725.1
[Ref.: #69480]	motile	yes	89.614	no
[Ref.: #69480]	flagellated	yes	55.304	no
[Ref.: #69480]	gram-positive	no	98.743	no
[Ref.: #69480]	anaerobic	no	96.608	no
[Ref.: #69480]	aerobic	yes	88.522	no
[Ref.: #69480]	halophile	no	96.117	no
[Ref.: #69480]	spore-forming	no	95.026	no
[Ref.: #69480]	glucose-util	yes	95.742	no
[Ref.: #69480]	thermophile	no	99.207	yes
[Ref.: #69480]	glucose-ferment	yes	94.057	yes

Availability in culture collections External links

[Ref.: #7573]

Culture collection no.

DSM 18520, ATCC 43969, CCUG 26331, CDC 2465-87, CIP 103324, CNY 7263

[Ref.: #74717]

SI-ID 42157

Literature:

	Title	Authors	Journal	DOI	Year
	Mutational Effects on Carbapenem Hydrolysis of YEM-1, a New Subclass B2 Metallo-beta-Lactamase from Yersinia mollaretii.	Mercuri PS, Esposito R, Bletard S, Di Costanzo S, Perilli M, Kerff F, Galleni M	Antimicrob Agents Chemother	10.1128/AAC.00105-20	2020	*

References

#7573

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18520

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34243 ; Curators of the CIP;
#48415 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 26331

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74717

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42157.1 )

#121003 Collection of Institut Pasteur ; Curators of the CIP; CIP 103324
* These data were automatically processed and therefore are not curated

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Yersinia mollaretii ATCC 43969 ATCC 43969

Yersinia mollaretii ATCC 43969 ATCC 43969

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