Yersinia mollaretii (DSM 18520, ATCC 43969, CCUG 26331)

Name: Yersinia mollaretii (DSM 18520, ATCC 43969, CCUG 26331)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5225

Type strain

Culture col. no. DSM 18520 ATCC 43969 CCUG 26331 CDC 2465-87 CIP 103324 1 more

NCBI tax ID(s) 349967 33060

Special Collections DSMZ CCUG CIP

History <- CIP <- H. H. Mollaret, Institut Pasteur, Paris 1989, H.H. Mollaret, Inst. Pasteur, Paris, France: strain CNY 7263 CIP <- 1989, H.H. Mollaret, Inst. Pasteur, Paris, France: strain CNY 7263

Links

Yersinia mollaretii DSM 18520 is a bacterium that was isolated from soil.

genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 42157

ATCC 43969,CCUG 26331,CIP 103324,CCM 4208,DSM 18520

@ref 20215

Last LPSN update 2026-02-09 11:18:55

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Yersiniaceae

Genus Yersinia

Species Yersinia mollaretii

Full scientific name Yersinia mollaretii Wauters et al. 1988

BacDive ID	Other strains from **Yersinia mollaretii** (3)	Type strain
136357	Y. mollaretii CIP 104888, CNY 24084
138647	Y. mollaretii CIP 103328, CNY 19795
144777	Y. mollaretii CCUG 26536

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	100

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7573	BHI MEDIUM (DSMZ Medium 215)	Medium recipe at MediaDive	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
7573	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
34243	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
121003	CIP Medium 3	Medium recipe at CIP
121003	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7573	positive	growth	28
34243	positive	growth	30

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		93.6
125438		90.08

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
7573	+	-	-	+	+	-	+	-	-	-	-	+	+	-	+	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
7573	soil	USA	USA	North America
48415	Soil	USA	USA	North America
121003	Environment, Soil	United States of America	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7573	1	Risk group (German classification) According to TRBA 466
121003	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1328272v1 assembly for Yersinia mollaretii ATCC 43969	complete	GCA_013282725	349967.11	8006022516	349967	98.87
66792	ASM16799v1 assembly for Yersinia mollaretii ATCC 43969	contig	GCA_000167995	349967.4	638341241	349967	42.76

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Yersinia mollaretii strain ATCC 43969 16S ribosomal RNA gene, partial sequence	AY332837	458	349967
20218	Yersinia mollaretii strain CCUG 26331 16S ribosomal RNA gene, partial sequence	EF179124	1461	33060
7573	Yersinia mollaretii 16S ribosomal RNA gene, partial sequence	AF366382	1461	349967
124043	Yersinia mollaretii strain DSM 18520 16S ribosomal RNA gene, partial sequence.	KJ606911	1469	33060

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Yersinia mollaretii ATCC 43969
PATRIC: 349967.11

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	93.60	no
125439	motility	BacteriaNetⓘ	yes	70.70	no
125439	gram_stain	BacteriaNetⓘ	negative	84.80	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	75.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Yersinia mollaretii ATCC 43969 ATCC 43969
NCBI: GCA_013282725.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	96.39	no
125438	aerobic	aerobicⓘ	no	65.49	no
125438	spore-forming	spore-formingⓘ	no	90.08	no
125438	thermophilic	thermophileⓘ	no	99.50	yes
125438	flagellated	motile2+ⓘ	yes	77.22	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Replacement of l-Amino Acids by d-Amino Acids in the Antimicrobial Peptide Ranalexin and Its Consequences for Antimicrobial Activity and Biodistribution.	Domhan C, Uhl P, Kleist C, Zimmermann S, Umstatter F, Leotta K, Mier W, Wink M.	Molecules	10.3390/molecules24162987	2019
Pathogenicity	Recombinant AfusinC, an anionic fungal CSalphabeta defensin from Aspergillus fumigatus, exhibits antimicrobial activity against gram-positive bacteria.	Contreras G, Braun MS, Schafer H, Wink M.	PLoS One	10.1371/journal.pone.0205509	2018
	Aromatic Residue F443 Modulates the Dimer Interface and Activity of Pseudomonas mandelii Glutathione Reductase.	Ho OM, Hoang T, Lee C.	ACS Omega	10.1021/acsomega.5c00192	2025
	Development and evaluation of a multi-target droplet digital PCR assay for highly sensitive and specific detection of Yersinia pestis.	Zhao Y, Yan Z, Song K, Li Y, Shen L, Cui Y, Du Z, Yang R, Song Y, Jing L, Zhao Y.	PLoS Negl Trop Dis	10.1371/journal.pntd.0012167	2024
Genetics	New Bacterial Phytase through Metagenomic Prospection.	Farias N, Almeida I, Meneses C.	Molecules	10.3390/molecules23020448	2018
Metabolism	Kinetic Studies on CphA Mutants Reveal the Role of the P158-P172 Loop in Activity versus Carbapenems.	Bottoni C, Perilli M, Marcoccia F, Piccirilli A, Pellegrini C, Colapietro M, Sabatini A, Celenza G, Kerff F, Amicosante G, Galleni M, Mercuri PS.	Antimicrob Agents Chemother	10.1128/aac.01703-15	2016
Metabolism	Functional plasticity of antibacterial EndoU toxins.	Michalska K, Quan Nhan D, Willett JLE, Stols LM, Eschenfeldt WH, Jones AM, Nguyen JY, Koskiniemi S, Low DA, Goulding CW, Joachimiak A, Hayes CS.	Mol Microbiol	10.1111/mmi.14007	2018
	Characterization of Autoinducer-3 Structure and Biosynthesis in E. coli.	Kim CS, Gatsios A, Cuesta S, Lam YC, Wei Z, Chen H, Russell RM, Shine EE, Wang R, Wyche TP, Piizzi G, Flavell RA, Palm NW, Sperandio V, Crawford JM.	ACS Cent Sci	10.1021/acscentsci.9b01076	2020
Metabolism	Inverse control of Rab proteins by Yersinia ADP-ribosyltransferase and glycosyltransferase related to clostridial glucosylating toxins.	Ost GS, Wirth C, Bogdanovic X, Kao WC, Schorch B, Aktories PJK, Papatheodorou P, Schwan C, Schlosser A, Jank T, Hunte C, Aktories K.	Sci Adv	10.1126/sciadv.aaz2094	2020
Enzymology	Comparison of two suspension arrays for simultaneous detection of five biothreat bacterial in powder samples.	Yang Y, Wang J, Wen H, Liu H.	J Biomed Biotechnol	10.1155/2012/831052	2012
	Proteolytic processing induces a conformational switch required for antibacterial toxin delivery.	Bartelli NL, Passanisi VJ, Michalska K, Song K, Nhan DQ, Zhou H, Cuthbert BJ, Stols LM, Eschenfeldt WH, Wilson NG, Basra JS, Cortes R, Noorsher Z, Gabraiel Y, Poonen-Honig I, Seacord EC, Goulding CW, Low DA, Joachimiak A, Dahlquist FW, Hayes CS.	Nat Commun	10.1038/s41467-022-32795-y	2022
	Analysis of multi-domain hypothetical proteins containing iron-sulphur clusters and fad ligands reveal rieske dioxygenase activity suggesting their plausible roles in bioremediation.	Sathyanarayanan N, Nagendra HG.	Bioinformation	10.6026/97320630081154	2012
Genetics	Unravelling the antibiotic and heavy metal resistome of a chronically polluted soil.	Salam LB.	3 Biotech	10.1007/s13205-020-02219-z	2020
	Microbial Community and Functional Gene Changes in Arctic Tundra Soils in a Microcosm Warming Experiment.	Yang Z, Yang S, Van Nostrand JD, Zhou J, Fang W, Qi Q, Liu Y, Wullschleger SD, Liang L, Graham DE, Yang Y, Gu B.	Front Microbiol	10.3389/fmicb.2017.01741	2017
Metabolism	Programmed Secretion Arrest and Receptor-Triggered Toxin Export during Antibacterial Contact-Dependent Growth Inhibition.	Ruhe ZC, Subramanian P, Song K, Nguyen JY, Stevens TA, Low DA, Jensen GJ, Hayes CS.	Cell	10.1016/j.cell.2018.10.033	2018
Enzymology	Bioinformatic analysis reveals high diversity of bacterial genes for laccase-like enzymes.	Ausec L, Zakrzewski M, Goesmann A, Schluter A, Mandic-Mulec I.	PLoS One	10.1371/journal.pone.0025724	2011
Pathogenicity	The main virulence determinant of Yersinia entomophaga MH96 is a broad-host-range toxin complex active against insects.	Hurst MR, Jones SA, Binglin T, Harper LA, Jackson TA, Glare TR.	J Bacteriol	10.1128/jb.01044-10	2011
Metabolism	Identification of YsrT and evidence that YsrRST constitute a unique phosphorelay system in Yersinia enterocolitica.	Walker KA, Obrist MW, Mildiner-Earley S, Miller VL.	J Bacteriol	10.1128/jb.00745-10	2010
Enzymology	Comparison of hand-held test kits, immunofluorescence microscopy, enzyme-linked immunosorbent assay, and flow cytometric analysis for rapid presumptive identification of Yersinia pestis.	Tomaso H, Thullier P, Seibold E, Guglielmo V, Buckendahl A, Rahalison L, Neubauer H, Scholz HC, Splettstoesser WD.	J Clin Microbiol	10.1128/jcm.00458-07	2007
Metabolism	Characterization of phenylpyruvate decarboxylase, involved in auxin production of Azospirillum brasilense.	Spaepen S, Versees W, Gocke D, Pohl M, Steyaert J, Vanderleyden J.	J Bacteriol	10.1128/jb.00830-07	2007
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
Metabolism	Organization, evolution, and expression analysis of the biosynthetic gene cluster for scytonemin, a cyanobacterial UV-absorbing pigment.	Sorrels CM, Proteau PJ, Gerwick WH.	Appl Environ Microbiol	10.1128/aem.02508-08	2009
Enzymology	Rapid and sensitive detection of Yersinia pestis using amplification of plague diagnostic bacteriophages monitored by real-time PCR.	Sergueev KV, He Y, Borschel RH, Nikolich MP, Filippov AA.	PLoS One	10.1371/journal.pone.0011337	2010
Phylogeny	Rapid differentiation of Francisella species and subspecies by fluorescent in situ hybridization targeting the 23S rRNA.	Splettstoesser WD, Seibold E, Zeman E, Trebesius K, Podbielski A.	BMC Microbiol	10.1186/1471-2180-10-72	2010
Enzymology	Why hypothetical protein KPN00728 of Klebsiella pneumoniae should be classified as chain C of succinate dehydrogenase?	Choi SB, Normi YM, Wahab HA.	Protein J	10.1007/s10930-009-9209-9	2009
	Virulence and prodigiosin antibiotic biosynthesis in Serratia are regulated pleiotropically by the GGDEF/EAL domain protein, PigX.	Fineran PC, Williamson NR, Lilley KS, Salmond GP.	J Bacteriol	10.1128/jb.00671-07	2007
Metabolism	Insights into the evolution of sialic acid catabolism among bacteria.	Almagro-Moreno S, Boyd EF.	BMC Evol Biol	10.1186/1471-2148-9-118	2009
Metabolism	Rickettsia phylogenomics: unwinding the intricacies of obligate intracellular life.	Gillespie JJ, Williams K, Shukla M, Snyder EE, Nordberg EK, Ceraul SM, Dharmanolla C, Rainey D, Soneja J, Shallom JM, Vishnubhat ND, Wattam R, Purkayastha A, Czar M, Crasta O, Setubal JC, Azad AF, Sobral BS.	PLoS One	10.1371/journal.pone.0002018	2008
	Mutational Effects on Carbapenem Hydrolysis of YEM-1, a New Subclass B2 Metallo-beta-Lactamase from Yersinia mollaretii.	Mercuri PS, Esposito R, Bletard S, Di Costanzo S, Perilli M, Kerff F, Galleni M	Antimicrob Agents Chemother	10.1128/AAC.00105-20	2020

References

#7573	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18520
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34243	; Curators of the CIP;
#48415	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 26331
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#121003	Collection of Institut Pasteur ; Curators of the CIP; CIP 103324
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Yersinia mollaretii (DSM 18520, ATCC 43969, CCUG 26331)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_013282725

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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