Yersinia enterocolitica subsp. enterocolitica (DSM 11067, ATCC 55075)

Name: Yersinia enterocolitica subsp. enterocolitica (DSM 11067, ATCC 55075)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5213

Type strain

Culture col. no. DSM 11067 ATCC 55075

NCBI tax ID(s) 150052

Special Collections DSMZ

History <- ATCC; ATCC 55075 (Yersinia enterocolitica subsp. enterocolitica) <- Res. Station, Agriculture Canada, Sydney, B.C., Canada;

Links

Yersinia enterocolitica subsp. enterocolitica DSM 11067 is a bacterium of the family Yersiniaceae.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 12660

LMG 18886,ATCC 55075,DSM 11067

@ref 20215

Last LPSN update 2026-02-09 11:18:54

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Yersiniaceae

Genus Yersinia

Species Yersinia enterocolitica subsp. enterocolitica

Full scientific name Yersinia enterocolitica subsp. enterocolitica (Schleifstein and Coleman 1939) Neubauer et al. 2000

BacDive ID	Other strains from **Yersinia enterocolitica subsp. enterocolitica** (7)	Type strain
5210	Y. enterocolitica subsp. enterocolitica 33114, DSM 4780, ATCC 9610, CIP 80.27, NCTC ... (type strain)
5212	Y. enterocolitica subsp. enterocolitica DSM 9499, CIP 81.42, NCTC 11174, CNY 383, ...
5215	Y. enterocolitica subsp. enterocolitica H 1424/94, DSM 11503
23974	Y. enterocolitica subsp. enterocolitica H 576/86, DSM 11504
23979	Y. enterocolitica subsp. enterocolitica DSM 27689, ATCC 23715, CECT 8263, NCTC 10598, ...
23980	Y. enterocolitica subsp. enterocolitica W22703pYV-, W22703pYV^-, DSM 28012
155005	Y. enterocolitica subsp. enterocolitica CCUG 56046

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4186	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
4186	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)
4186	positive	growth	30

Physiology and metabolism

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	-	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	+	fermentation	from API 20E
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68368	16136 ChEBI	hydrogen sulfide		from API 20E
68368	35581 ChEBI	indole		from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68368	35581 ChEBI	indole	+	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
4186	+	-	-	+	-	-	+	-	+	-	-	+	+	+	+	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
4186	+	-	-	+	-	-	+	-	+	+	-	+	+	+	+	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation

@ref	Country	Country ISO 3 Code	Continent
4186	Canada	CAN	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4186	2	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Yersinia enterocolitica subsp. enterocolitica strain ATCC 55075 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU294319	940		150052
20218	Yersinia enterocolitica subsp. enterocolitica strain ATCC 55075 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU294320	961		150052

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Isolation and Characterization of a Bacillus amyloliquefaciens Bacteriophage JBA6 and Its Endolysin PlyJBA6.	Kim J, Kong M.	J Microbiol Biotechnol	10.4014/jmb.2502.02026	2025
	Rapid Colorimetric Quantita2tive Portable Platform for Detection of Brucella melitensis Based on a Fluorescence Resonance Energy Transfer Assay and Nanomagnetic Particles.	Alhogail S, Chinnappan R, Suaifan GARY, Abu-Salah KM, Al-Kattan K, Cialla-May D, Jurgen P, Zourob MM.	ACS Omega	10.1021/acsomega.4c00192	2024
	Isolation and Characterization of a Weizmannia coagulans Bacteriophage Youna2 and Its Endolysin PlyYouna2.	Son B, Kim Y, Yu B, Kong M.	J Microbiol Biotechnol	10.4014/jmb.2303.03021	2023
	Development of a novel sequence based real-time PCR assay for specific and sensitive detection of Burkholderia pseudomallei in clinical and environmental matrices.	Yadav PK, Singh S, Paul M, Kumar S, Ponmariappan S, Thavaselvam D.	Ann Clin Microbiol Antimicrob	10.1186/s12941-024-00693-4	2024
	Characterization of a New and Efficient Polyvalent Phage Infecting E. coli O157:H7, Salmonella spp., and Shigella sonnei.	Kim SH, Adeyemi DE, Park MK.	Microorganisms	10.3390/microorganisms9102105	2021
Enzymology	Serological and molecular investigation for brucellosis in swine in selected districts of Uganda.	Erume J, Roesel K, Dione MM, Ejobi F, Mboowa G, Kungu JM, Akol J, Pezo D, El-Adawy H, Melzer F, Elschner M, Neubauer H, Grace D.	Trop Anim Health Prod	10.1007/s11250-016-1067-9	2016
	Genotyping of human and porcine Yersinia enterocolitica, Yersinia intermedia, and Yersinia bercovieri strains from Switzerland by amplified fragment length polymorphism analysis.	Boghenbor KK, On SL, Kokotovic B, Baumgartner A, Wassenaar TM, Wittwer M, Bissig-Choisat B, Frey J.	Appl Environ Microbiol	10.1128/aem.01996-05	2006
Biotechnology	Diagnostic microarray for 14 water and foodborne pathogens using a flatbed scanner.	Srinivasan V, Stedtfeld RD, Tourlousse DM, Baushke SW, Xin Y, Miller SM, Pham T, Rouillard JM, Gulari E, Tiedje JM, Hashsham SA.	J Microbiol Methods	10.1016/j.mimet.2017.04.009	2017
Enzymology	Development of an improved selective and differential medium for isolation of Salmonella spp.	Park SH, Ryu S, Kang DH.	J Clin Microbiol	10.1128/jcm.01228-12	2012
Enzymology	Recombinase polymerase amplification assay for rapid detection of Francisella tularensis.	Euler M, Wang Y, Otto P, Tomaso H, Escudero R, Anda P, Hufert FT, Weidmann M.	J Clin Microbiol	10.1128/jcm.06504-11	2012
	PCR detection of virulence genes in Yersinia enterocolitica and Yersinia pseudotuberculosis and investigation of virulence gene distribution.	Thoerner P, Bin Kingombe CI, Bogli-Stuber K, Bissig-Choisat B, Wassenaar TM, Frey J, Jemmi T.	Appl Environ Microbiol	10.1128/aem.69.3.1810-1816.2003	2003
Enzymology	Static self-directed sample dispensing into a series of reaction wells on a microfluidic card for parallel genetic detection of microbial pathogens.	Stedtfeld RD, Liu YC, Stedtfeld TM, Kostic T, Kronlein M, Srivannavit O, Khalife WT, Tiedje JM, Gulari E, Hughes M, Etchebarne B, Hashsham SA.	Biomed Microdevices	10.1007/s10544-015-9994-1	2015
Enzymology	In situ-synthesized virulence and marker gene biochip for detection of bacterial pathogens in water.	Miller SM, Tourlousse DM, Stedtfeld RD, Baushke SW, Herzog AB, Wick LM, Rouillard JM, Gulari E, Tiedje JM, Hashsham SA.	Appl Environ Microbiol	10.1128/aem.01962-07	2008

References

#4186	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11067
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#68368	Automatically annotated from API 20E .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Yersinia enterocolitica subsp. enterocolitica (DSM 11067, ATCC 55075)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API 20E

Isolation, sampling and environmental information

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

Genome-based predictions

Literature

Literature

References

BacDive

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