Yersinia enterocolitica subsp. enterocolitica (DSM 4780, ATCC 9610, CIP 80.27)

Name: Yersinia enterocolitica subsp. enterocolitica (DSM 4780, ATCC 9610, CIP 80.27)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5210

Type strain

Strain Designation 33114

Culture col. no. DSM 4780 ATCC 9610 CIP 80.27 NCTC 12982 WDCM 00038 13 more

NCBI tax ID(s) 1218100 630 150052

Special Collections DSMZ CCUG JCM CIP

History <- ATCC; ATCC 9610 <- J.M. Coffey; 33114 (Bacterium enterocoliticum) R. Sakazaki 446 <-- J. M. Coffey 33114 <-- M. McIver and R. Pike. CIP <- 1980, H.H. Mollaret, Inst. Pasteur, Paris, France: strain CNY 161 <- 1932, R.M. Pike, Bacterium enterocoliticum

Links

Yersinia enterocolitica subsp. enterocolitica 33114 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from glanders-like infection of face .

Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 10385

LMG 7899,ATCC 9610,CCUG 11291,CCUG 12369,DSM 4780,NBIMCC 8739,NBRC 105693,CIP 8027,NCTC 12982,CECT 4315,CCRC 13999,JCM 7577,CCM 7204,BCRC 13999,ICMP 15678,CIP 80.27,VTT E-97838

@ref 20215

Last LPSN update 2026-02-09 11:18:54

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Yersiniaceae

Genus Yersinia

Species Yersinia enterocolitica subsp. enterocolitica

Full scientific name Yersinia enterocolitica subsp. enterocolitica (Schleifstein and Coleman 1939) Neubauer et al. 2000

BacDive ID	Other strains from **Yersinia enterocolitica subsp. enterocolitica** (7)	Type strain
5212	Y. enterocolitica subsp. enterocolitica DSM 9499, CIP 81.42, NCTC 11174, CNY 383, ...
5213	Y. enterocolitica subsp. enterocolitica DSM 11067, ATCC 55075
5215	Y. enterocolitica subsp. enterocolitica H 1424/94, DSM 11503
23974	Y. enterocolitica subsp. enterocolitica H 576/86, DSM 11504
23979	Y. enterocolitica subsp. enterocolitica DSM 27689, ATCC 23715, CECT 8263, NCTC 10598, ...
23980	Y. enterocolitica subsp. enterocolitica W22703pYV-, W22703pYV^-, DSM 28012
155005	Y. enterocolitica subsp. enterocolitica CCUG 56046

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119059	negative	rod-shaped
125439	negative		96.4
125438	negative		100

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1821	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
32772	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
1821	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
119059	CIP Medium 72	Medium recipe at CIP
119059	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1821	positive	growth	37
1821	positive	growth	30
32772	positive	growth	30
67770	positive	growth	30
119059	positive	growth	10-41
119059	negative	growth	5

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
119059	facultative anaerobe
125439	obligate aerobe	93.6

Antibiotic susceptibility testing

	Test 1	Test 2
@ref	1821	1821
Medium	Mueller-Hinton Agar	Müller-Hinton Agar
Manual annotation	1	1
	Inhibition zone diameter in mm	Inhibition zone diameter in mm
Amikacin 30µg (disc)	26	24-26
Ampicillin 10µg (disc)	28-30	30
Aztreonam 30µg (disc)	>50	48-50
Bacitracin 10Unit	8	n.d.
Cefalotin 30µg (disc)	32	n.d.
Cefazolin 30µg (disc)	32	n.d.
Cefiderocol 30µg (disc)	n.d.	38-40
Cefotaxime 30µg (disc)	>50	50
Ceftazidime 10µg (disc)	n.d.	40
Ceftriaxone 30µg (disc)	>50	50
Chloramphenicol 30µg (disc)	34-36	42-42
Ciprofloxacin 5µg (disc)	n.d.	50
Clindamycin 10µg (disc)	10-12	10-12
Colistin 10µg (disc)	18	n.d.
Colistin sulphate 10µg (disc)	n.d.	20
Doxycycline 30µg (disc)	34	n.d.
Erythromycin 15µg (disc)	12-14	14
Fosfomycin 50µg (disc)	>50	>50
Gentamicin 30µg (disc)	n.d.	22-24
Gentamycin 10µg (disc)		n.d.
Imipenem 10µg (disc)	40	38-40
Kanamycin 30µg (disc)	26	26
Levofloxacin 5µg (disc)	n.d.	48
Lincomycin 15µg (disc)	12	n.d.
Linezolid 10µg (disc)	8-10	16
Meropenem 10µg (disc)	n.d.	42-44
Mezlocillin 30µg (disc)	36	n.d.
Moxifloxacin 5µg (disc)	40	40-42
Neomycin 30µg (disc)	20	n.d.
Nitrofurantoin 100µg (disc)	20-22	24-26
Norfloxacin 10µg (disc)	44-46	n.d.
Nystatin 100Unit	12-14	n.d.
Ofloxacin 5µg (disc)	42	46
Oxacillin 5µg (disc)	0	0
Penicillin G 6µg (disc)	20-22	20
Pipemidic acid 20µg (disc)	36	n.d.
Piperacillin/Tazobactam 40µg (disc)	42-44	n.d.
Piperacillin/Tazobactam 110µg (disc)	n.d.	42
Polymyxin B 300Unit	18	20
Quinupristin/Dalfopristin 15µg (disc)	0	10
Rifampicin 5µg (disc)	n.d.	18
Teicoplanin 30µg (disc)	0	0
Tetracycline 30µg (disc)	34-36	40
Ticarcillin 75µg (disc)	36	38-40
Tigecycline 15µg (disc)	n.d.	28
Trimethoprim-sulfamethoxazole (1:19) 10µg (disc)	n.d.	38-40
Vancomycin 30µg (disc)	6-8	0

Spore formation

@ref	Spore formation	Confidence
125439		97.5
125438		91.271

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
119059	16947 ChEBI	citrate	-	carbon source
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
119059	17234 ChEBI	glucose	+	fermentation
119059	17234 ChEBI	glucose	+	degradation
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	-	fermentation	from API 20E
119059	17716 ChEBI	lactose	+	fermentation
68368	25094 ChEBI	lysine	-	degradation	from API 20E
119059	15792 ChEBI	malonate	-	assimilation
119059	29864 ChEBI	mannitol	+	fermentation
68368	28053 ChEBI	melibiose	-	fermentation	from API 20E
119059	17632 ChEBI	nitrate	+	reduction
119059	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
119059	132112 ChEBI	sodium thiosulfate	-	builds gas from
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	+	energy source	from API 20E
68368	16199 ChEBI	urea	+	hydrolysis	from API 20E

Antibiotic resistance

@ref	ChEBI	Metabolite	Is resistant	Resistance conc.
1821	7809	Oxacillin		5 µg (disc)	from Antibiotic test
1821	29687	Teicoplanin		30 µg (disc)	from Antibiotic test

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
119059	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
119059	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	+			from API 20E
119059	17234 ChEBI	glucose		+
68368	35581 ChEBI	indole			+	from API 20E

Enzymes

@ref	Value	Activity	Ec
119059	alcohol dehydrogenase	-	1.1.1.1
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
119059	beta-galactosidase	+	3.2.1.23
68368	beta-galactosidase	+	3.2.1.23	from API 20E
119059	catalase	+	1.11.1.6
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
119059	gelatinase	-
68368	gelatinase	-		from API 20E
119059	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
119059	ornithine decarboxylase	+	4.1.1.17
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
119059	oxidase	-
119059	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
119059	urease	+	3.5.1.5
68368	urease	+	3.5.1.5	from API 20E

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
1821	+	-	-	+	+	-	+	-	+	+	-	+	+	+	+	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
1821	+	-	-	+	-	-	+	-	+	+	-	+	+	-	+	-	+	-	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Infection	#Disease

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent	Isolation date
1821	glanders-like infection of face (woman, 53 years old)
67770	Glanders-like infection of face
119059	Face, glanders-like infection	France	FRA	Europe	1932

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1821	2	Risk group (German classification) According to TRBA 466
119059	2	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	32868_C01 assembly for Yersinia enterocolitica subsp. enterocolitica NCTC12982	complete	GCA_901472495	150052.14	8118010593	150052	98.36
67770	YEG_1 assembly for Yersinia enterocolitica ATCC 9610	scaffold	GCA_000755055	630.33	2609460127	630	77.29
67770	ASM159873v1 assembly for Yersinia enterocolitica subsp. enterocolitica NBRC 105693	contig	GCA_001598735	1218100.3	2731957712	1218100	66.28

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Yersinia enterocolitica 16S ribosomal RNA gene, partial sequence	AF366378	1461	630
20218	Yersinia enterocolitica partial 16S rRNA gene, type strain ATCC 9610T	AJ639645	1086	630
20218	Yersinia enterocolitica subsp. enterocolitica strain ATCC 9610 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU294313	939	150052
20218	Yersinia enterocolitica subsp. enterocolitica strain ATCC 9610 16S ribosomal RNA gene, partial sequence; 16S-23S ribosomal RNA intergenic spacer, complete sequence; and 23S ribosomal RNA gene, partial sequence	EU294314	960	150052
20218	Yersinia enterocolitica subsp. enterocolitica strain ATCC 9610 16S ribosomal RNA gene, partial sequence	FJ717343	1466	150052
20218	Yersinia enterocolitica partial 16S rRNA gene, strain ATCC 9610	FM207093	395	630
20218	Yersinia enterocolitica strain ATCC 9610 16S ribosomal RNA gene, partial sequence	KC788290	410	630
20218	Yersinia enterocolitica 16S ribosomal RNA	M59292	1485	630
20218	Yersinia enterocolitica strain CCUG 11291 16S ribosomal RNA gene, partial sequence	EF179128	1461	630
20218	Yersinia enterocolitica strain CCUG 12369 16S ribosomal RNA gene, partial sequence	EF179129	1461	630
1821	Yersinia enterocolitica strain ATCC 9610 16S ribosomal RNA, partial sequence	NR_041832	1461	630
124043	Yersinia enterocolitica subsp. enterocolitica gene for 16S rRNA, partial sequence, strain: NBRC 105693.	AB682267	1468	150052
124043	Yersinia enterocolitica strain ATCC 9610 16S ribosomal RNA gene, partial sequence.	KJ606906	1466	630

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Yersinia enterocolitica strain ATCC 9610
PATRIC: 630.33

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	93.60	no
125439	gram_stain	BacteriaNetⓘ	negative	96.40	no
125439	motility	BacteriaNetⓘ	yes	71.60	no
125439	spore_formation	BacteriaNetⓘ	no	97.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Yersinia enterocolitica subsp. enterocolitica NCTC12982
NCBI: GCA_901472495.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	95.64	yes
125438	aerobic	aerobicⓘ	no	68.62	yes
125438	spore-forming	spore-formingⓘ	no	91.27	no
125438	thermophilic	thermophileⓘ	no	100.00	no
125438	flagellated	motile2+ⓘ	yes	75.47	no

Literature

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Enzymology	Multisite Evaluation of the BD Max Extended Enteric Bacterial Panel for Detection of Yersinia enterocolitica, Enterotoxigenic Escherichia coli, Vibrio, and Plesiomonas shigelloides from Stool Specimens.	Simner PJ, Oethinger M, Stellrecht KA, Pillai DR, Yogev R, Leblond H, Mortensen J.	J Clin Microbiol	10.1128/jcm.00911-17	2017
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	Whole-Genome Yersinia sp. Assemblies from 10 Diverse Strains.	Daligault HE, Davenport KW, Minogue TD, Bishop-Lilly KA, Broomall SM, Bruce DC, Chain PS, Coyne SR, Frey KG, Gibbons HS, Jaissle J, Koroleva GI, Ladner JT, Lo CC, Munk C, Palacios GF, Redden CL, Rosenzweig CN, Scholz MB, Johnson SL.	Genome Announc	10.1128/genomea.01055-14	2014
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Enzymology	Comprehensive Laboratory Evaluation of a Lateral Flow Assay for the Detection of Yersinia pestis.	Prentice KW, DePalma L, Ramage JG, Sarwar J, Parameswaran N, Petersen J, Yockey B, Young J, Joshi M, Thirunavvukarasu N, Singh A, Chapman C, Avila JR, Pillai CA, Manickam G, Sharma SK, Morse SA, Venkateswaran KV, Anderson K, Hodge DR, Pillai SP.	Health Secur	10.1089/hs.2019.0094	2019
Biotechnology	Probiotic potential of lactic acid bacteria obtained from fermented curly kale juice.	Szutowska J, Gwiazdowska D.	Arch Microbiol	10.1007/s00203-020-02095-4	2021
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Enzymology	Yersinia enterocolitica in diagnostic fecal samples from European dogs and cats: identification by fourier transform infrared spectroscopy and matrix-assisted laser desorption ionization-time of flight mass spectrometry.	Stamm I, Hailer M, Depner B, Kopp PA, Rau J.	J Clin Microbiol	10.1128/jcm.02506-12	2013
Genetics	Complete genome sequence of bacteriophage vB_YenP_AP5 which infects Yersinia enterocolitica of serotype O:3.	Leon-Velarde CG, Kropinski AM, Chen S, Abbasifar A, Griffiths MW, Odumeru JA.	Virol J	10.1186/1743-422x-11-188	2014
Genetics	Whole-Genome Single-Nucleotide Polymorphism (SNP) Analysis Applied Directly to Stool for Genotyping Shiga Toxin-Producing Escherichia coli: an Advanced Molecular Detection Method for Foodborne Disease Surveillance and Outbreak Tracking.	Singh N, Lapierre P, Quinlan TM, Halse TA, Wirth S, Dickinson MC, Lasek-Nesselquist E, Musser KA.	J Clin Microbiol	10.1128/jcm.00307-19	2019
Metabolism	Highlighting the Biotechnological Potential of Deep Oceanic Crust Fungi through the Prism of Their Antimicrobial Activity.	Quemener M, Dayras M, Frotte N, Debaets S, Le Meur C, Barbier G, Edgcomb V, Mehiri M, Burgaud G.	Mar Drugs	10.3390/md19080411	2021
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Proteome	Broad-host-range Yersinia phage PY100: genome sequence, proteome analysis of virions, and DNA packaging strategy.	Schwudke D, Ergin A, Michael K, Volkmar S, Appel B, Knabner D, Konietzny A, Strauch E.	J Bacteriol	10.1128/jb.01402-07	2008
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Phylogeny	Comparison of three different methods for detection of Shiga toxin-producing Escherichia coli in a tertiary pediatric care center.	Vallieres E, Saint-Jean M, Rallu F.	J Clin Microbiol	10.1128/jcm.02219-12	2013
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Enzymology	Development of a rapid PCR assay specific for Staphylococcus saprophyticus and application to direct detection from urine samples.	Martineau F, Picard FJ, Menard C, Roy PH, Ouellette M, Bergeron MG.	J Clin Microbiol	10.1128/jcm.38.9.3280-3284.2000	2000
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Pathogenicity	New real-time PCR assay for rapid detection of methicillin-resistant Staphylococcus aureus directly from specimens containing a mixture of staphylococci.	Huletsky A, Giroux R, Rossbach V, Gagnon M, Vaillancourt M, Bernier M, Gagnon F, Truchon K, Bastien M, Picard FJ, van Belkum A, Ouellette M, Roy PH, Bergeron MG.	J Clin Microbiol	10.1128/jcm.42.5.1875-1884.2004	2004
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Metabolism	Polypectate digestion by Yersinia.	von Riesen VL.	J Clin Microbiol	10.1128/jcm.2.6.552-553.1975	1975
Enzymology	Direct polymerase chain reaction detection of Campylobacter jejuni and Campylobacter coli in raw milk and dairy products.	Wegmuller B, Luthy J, Candrian U.	Appl Environ Microbiol	10.1128/aem.59.7.2161-2165.1993	1993
Enzymology	Detection of Francisella tularensis in ulcers of patients with tularemia by PCR.	Sjostedt A, Eriksson U, Berglund L, Tarnvik A.	J Clin Microbiol	10.1128/jcm.35.5.1045-1048.1997	1997
	Divergence among genes encoding the elongation factor Tu of Yersinia Species.	Isabel S, Leblanc E, Boissinot M, Boudreau DK, Grondin M, Picard FJ, Martel EA, Parham NJ, Chain PS, Bader DE, Mulvey MR, Bryden L, Roy PH, Ouellette M, Bergeron MG.	J Bacteriol	10.1128/jb.01067-08	2008
	Transcriptional enhancement of the Listeria monocytogenes PCR and simple immunoenzymatic assay of the product using anti-RNA:DNA antibodies.	Blais BW.	Appl Environ Microbiol	10.1128/aem.60.1.348-352.1994	1994
Phylogeny	Evolution of aromatic amino acid biosynthesis and application to the fine-tuned phylogenetic positioning of enteric bacteria.	Ahmad S, Weisburg WG, Jensen RA.	J Bacteriol	10.1128/jb.172.2.1051-1061.1990	1990
Enzymology	Detection of Mycobacterium tuberculosis by PCR amplification with pan-Mycobacterium primers and hybridization to an M. tuberculosis-specific probe.	Tevere VJ, Hewitt PL, Dare A, Hocknell P, Keen A, Spadoro JP, Young KK.	J Clin Microbiol	10.1128/jcm.34.4.918-923.1996	1996
	Characterization of murine monoclonal antibodies against serogroup B salmonellae and application as serotyping reagents.	Tsang RS, Chan KH, Lau NW, Choi DK, Law DK, Ng MH.	J Clin Microbiol	10.1128/jcm.29.9.1899-1903.1991	1991
Biotechnology	Detection of Salmonella spp. in oysters by PCR.	Bej AK, Mahbubani MH, Boyce MJ, Atlas RM.	Appl Environ Microbiol	10.1128/aem.60.1.368-373.1994	1994
Phylogeny	DNA probes for the identification of Haemophilus ducreyi.	Parsons LM, Shayegani M, Waring AL, Bopp LH.	J Clin Microbiol	10.1128/jcm.27.7.1441-1445.1989	1989
	PCR primers and probes for the 16S rRNA gene of most species of pathogenic bacteria, including bacteria found in cerebrospinal fluid.	Greisen K, Loeffelholz M, Purohit A, Leong D.	J Clin Microbiol	10.1128/jcm.32.2.335-351.1994	1994
	Screening of novel therapeutic targets and chimeric vaccine construction against antibiotic-resistant Yersinia Enterocolitica.	Shah M, Fatima R, Sarfraz A, Khan MU, Ejaz H, Alam M, Aziz S, Nishan U, Ali A, Bari A, Ojha SC.	Front Immunol	10.3389/fimmu.2025.1555248	2025
	Current Challenges in Yersinia Diagnosis and Treatment.	Grygiel-Gorniak B.	Microorganisms	10.3390/microorganisms13051133	2025
	Development of Loop-Mediated Isothermal Amplification Rapid Diagnostic Assays for the Detection of Klebsiella pneumoniae and Carbapenemase Genes in Clinical Samples.	Poirier AC, Kuang D, Siedler BS, Borah K, Mehat JW, Liu J, Tai C, Wang X, van Vliet AHM, Ma W, Jenkins DR, Clark J, La Ragione RM, Qu J, McFadden J.	Front Mol Biosci	10.3389/fmolb.2021.794961	2021
Metabolism	The antimicrobial compound xantholysin defines a new group of Pseudomonas cyclic lipopeptides.	Li W, Rokni-Zadeh H, De Vleeschouwer M, Ghequire MG, Sinnaeve D, Xie GL, Rozenski J, Madder A, Martins JC, De Mot R.	PLoS One	10.1371/journal.pone.0062946	2013
	Antioxidant and Antimicrobial Biofoil Based on Chitosan and Japanese Knotweed (Fallopia japonica, Houtt.) Rhizome Bark Extract.	Naumoska K, Jug U, Korge K, Oberlintner A, Golob M, Novak U, Vovk I, Likozar B.	Antioxidants (Basel)	10.3390/antiox11061200	2022
Pathogenicity	Bacillus cereus Response to a Proanthocyanidin Trimer, a Transcriptional and Functional Analysis.	Tamura T, Ozawa M, Tanaka N, Arai S, Mura K.	Curr Microbiol	10.1007/s00284-016-1032-x	2016
Phylogeny	Identification of clinically relevant viridans streptococci by an oligonucleotide array.	Chen CC, Teng LJ, Kaiung S, Chang TC.	J Clin Microbiol	10.1128/jcm.43.4.1515-1521.2005	2005
	Epinecidin-1, an Antimicrobial Peptide Derived From Grouper (Epinephelus coioides): Pharmacological Activities and Applications.	Chee PY, Mang M, Lau ES, Tan LT, He YW, Lee WL, Pusparajah P, Chan KG, Lee LH, Goh BH.	Front Microbiol	10.3389/fmicb.2019.02631	2019
	Determination of Antioxidant, Antimicrobial Activity, Heavy Metals and Elements Content of Seaweed Extracts.	Cmikova N, Galovicova L, Miskeje M, Borotova P, Kluz M, Kacaniova M.	Plants (Basel)	10.3390/plants11111493	2022
	GC, GC/MS Analysis, and Biological Effects of Essential Oils from Thymus mastchina and Elettaria cardamomum.	Vukovic NL, Vukic MD, Obradovic AD, Matic MM, Galovicova L, Kacaniova M.	Plants (Basel)	10.3390/plants11233213	2022
	Chemical Composition and Biological Activities of Eucalyptus globulus Essential Oil.	Cmikova N, Galovicova L, Schwarzova M, Vukic MD, Vukovic NL, Kowalczewski PL, Bakay L, Kluz MI, Puchalski C, Kacaniova M.	Plants (Basel)	10.3390/plants12051076	2023
	Chemical and Biological Characterization of Melaleuca alternifolia Essential Oil.	Borotova P, Galovicova L, Vukovic NL, Vukic M, Tvrda E, Kacaniova M.	Plants (Basel)	10.3390/plants11040558	2022
	Salvia sclarea Essential Oil Chemical Composition and Biological Activities.	Kacaniova M, Vukovic NL, Cmikova N, Galovicova L, Schwarzova M, Simora V, Kowalczewski PL, Kluz MI, Puchalski C, Bakay L, Vukic MD.	Int J Mol Sci	10.3390/ijms24065179	2023
	Thymus vulgaris Essential Oil and Its Biological Activity.	Galovicova L, Borotova P, Valkova V, Vukovic NL, Vukic M, Stefanikova J, Duranova H, Kowalczewski PL, Cmikova N, Kacaniova M.	Plants (Basel)	10.3390/plants10091959	2021
	Biological Activity of Cupressus sempervirens Essential Oil.	Galovicova L, Cmikova N, Schwarzova M, Vukic MD, Vukovic NL, Kowalczewski PL, Bakay L, Kluz MI, Puchalski C, Obradovic AD, Matic MM, Kacaniova M.	Plants (Basel)	10.3390/plants12051097	2023
	Antimicrobial and Antioxidant Activity of Different Honey Samples from Beekeepers and Commercial Producers.	Kacaniova M, Borotova P, Galovicova L, Kunova S, Stefanikova J, Kowalczewski PL, Sedik P.	Antibiotics (Basel)	10.3390/antibiotics11091163	2022
	Chemical Composition and Biological Activity of Tanacetum balsamita Essential Oils Obtained from Different Plant Organs.	Vukic MD, Vukovic NL, Obradovic AD, Galovicova L, Cmikova N, Kacaniova M, Matic MM.	Plants (Basel)	10.3390/plants11243474	2022
	Phytochemistry and Biological Activities of Essential Oils from Six Aromatic Medicinal Plants with Cosmetic Properties.	Ailli A, Handaq N, Touijer H, Gourich AA, Drioiche A, Zibouh K, Eddamsyry B, El Makhoukhi F, Mouradi A, Bin Jardan YA, Bourhia M, Elomri A, Zair T.	Antibiotics (Basel)	10.3390/antibiotics12040721	2023
	Phenolic Compounds Obtained from Olea europaea By-Products and their Use to Improve the Quality and Shelf Life of Meat and Meat Products-A Review.	Munekata PES, Nieto G, Pateiro M, Lorenzo JM.	Antioxidants (Basel)	10.3390/antiox9111061	2020
Pathogenicity	A New Pipeline for Designing Phage Cocktails Based on Phage-Bacteria Infection Networks.	Molina F, Simancas A, Ramirez M, Tabla R, Roa I, Rebollo JE.	Front Microbiol	10.3389/fmicb.2021.564532	2021
Enzymology	Development of a PCR assay for detection of Yersinia ruckeri in tissues of inoculated and naturally infected trout.	Gibello A, Blanco MM, Moreno MA, Cutuli MT, Domenech A, Dominguez L, Fernandez-Garayzabal JF.	Appl Environ Microbiol	10.1128/aem.65.1.346-350.1999	1999
	Laboratory evaluation of the broad-spectrum antibacterial efficacy of a low-irradiance visible 405-nm light system for surface-simulated decontamination.	Sinclair LG, Dougall LR, Ilieva Z, McKenzie K, Anderson JG, MacGregor SJ, Maclean M.	Health Technol (Berl)	10.1007/s12553-023-00761-3	2023
	Novel Conopeptides of Largely Unexplored Indo Pacific Conus sp.	Lebbe EK, Ghequire MG, Peigneur S, Mille BG, Devi P, Ravichandran S, Waelkens E, D'Souza L, De Mot R, Tytgat J.	Mar Drugs	10.3390/md14110199	2016
	A Time-Course Study on a Food Contact Material (FCM)-Certified Coating Based on Titanium Oxide Deposited onto Aluminum.	Di Cerbo A, Mescola A, Rosace G, Trovato V, Canton R, Iseppi R, Stocchi R, Ghazanfar S, Rea S, Loschi AR, Sabia C	Biology (Basel)	10.3390/biology11010097	2022
	Antibacterial Effect of Stainless Steel Surfaces Treated with a Nanotechnological Coating Approved for Food Contact.	Di Cerbo A, Mescola A, Rosace G, Stocchi R, Rossi G, Alessandrini A, Preziuso S, Scarano A, Rea S, Loschi AR, Sabia C	Microorganisms	10.3390/microorganisms9020248	2021
	Antibacterial Effect of Aluminum Surfaces Untreated and Treated with a Special Anodizing Based on Titanium Oxide Approved for Food Contact.	Di Cerbo A, Mescola A, Iseppi R, Canton R, Rossi G, Stocchi R, Loschi AR, Alessandrini A, Rea S, Sabia C	Biology (Basel)	10.3390/biology9120456	2020
Pathogenicity	Effect of low doses of biocides on the antimicrobial resistance and the biofilms of Cronobacter sakazakii and Yersinia enterocolitica.	Capita R, Vicente-Velasco M, Rodriguez-Melcon C, Garcia-Fernandez C, Carballo J, Alonso-Calleja C	Sci Rep	10.1038/s41598-019-51907-1	2019
Pathogenicity	Development of a quaternized chitosan with enhanced antibacterial efficacy.	Khaira GK, Kumariya R, Chibber M, Ghosh M	J Water Health	10.2166/wh.2013.029	2013
Pathogenicity	Synergistic effect between colistin and bacteriocins in controlling Gram-negative pathogens and their potential to reduce antibiotic toxicity in mammalian epithelial cells.	Naghmouchi K, Baah J, Hober D, Jouy E, Rubrecht C, Sane F, Drider D	Antimicrob Agents Chemother	10.1128/AAC.02328-12	2013
Phylogeny	Isolation of bacteriocin-like substances producing bacteria from finished cattle-manure compost and activity evaluation against some food-borne pathogenic and spoilage bacteria.	Abdel-Mohsein H, Yamamoto N, Otawa K, Tada C, Nakai Y	J Gen Appl Microbiol	10.2323/jgam.56.151	2010
Phylogeny	The application of PCR fingerprinting to the differentiation of Yersinia enterocolitica strains isolated from humans and pigs.	Kot B, Blaszczyk M	Acta Microbiol Pol		2003
Phylogeny	Yersinia enterocolitica 16S rRNA gene types belong to the same genospecies but form three homology groups.	Neubauer H, Aleksic S, Hensel A, Finke EJ, Meyer H	Int J Med Microbiol	10.1016/S1438-4221(00)80107-1	2000
Stress	Role of Glycine Betaine and Related Osmolytes in Osmotic Stress Adaptation in Yersinia enterocolitica ATCC 9610.	Park S, Smith LT, Smith GM	Appl Environ Microbiol	10.1128/aem.61.12.4378-4381.1995	1995
Pathogenicity	Properties of Yersinia enterocolitica porins: interference with biological functions of phagocytes, nitric oxide production and selective cytokine release.	Tufano MA, Rossano F, Catalanotti P, Liguori G, Marinelli A, Baroni A, Marinelli P	Res Microbiol	10.1016/0923-2508(94)90185-6	1994
Biotechnology	Construction and comparison of response surface kinetic models for the Yersinia enterocolitica type strain and a food isolate under aerobic conditions.	Hudson JA	Int J Food Microbiol	10.1016/0168-1605(93)90045-i	1993
	Characterization and Genome Analysis of Arthrobacter bangladeshi sp. nov., Applied for the Green Synthesis of Silver Nanoparticles and Their Antibacterial Efficacy against Drug-Resistant Human Pathogens.	Huq MA, Akter S.	Pharmaceutics	10.3390/pharmaceutics13101691	2021
Phylogeny	Yersinia hibernica sp. nov., isolated from pig-production environments.	Nguyen SV, Muthappa DM, Hurley D, Donoghue O, McCabe E, Anes J, Schaffer K, Murphy BP, Buckley JF, Fanning S	Int J Syst Evol Microbiol	10.1099/ijsem.0.003422	2019

References

#1821	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4780
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#32772	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#119059	Collection of Institut Pasteur ; Curators of the CIP; CIP 80.27
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Yersinia enterocolitica subsp. enterocolitica (DSM 4780, ATCC 9610, CIP 80.27)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

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Physiology and metabolism

Oxygen tolerance

Antibiotic susceptibility testing

Spore formation

Metabolite utilization

Antibiotic resistance

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API 20E

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