Name: Sulfurihydrogenibium rodmanii UZ3-5
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 520

Type strain:

Species: Sulfurihydrogenibium rodmanii

Strain Designation: UZ3-5

Culture col. no.: DSM 19533, ATCC BAA-1536, OCM 900

Strain history: <- A.-L. Reysenbach, Dept. Biology, Portland State Univ., USA; UZ3-5

NCBI tax ID(s): 380763 (species)

SI-ID 401128

DSM 19533

Special Collections

Section

When using BacDive for research please cite our paper

Sulfurihydrogenibium rodmanii UZ3-5 is a microaerophile, thermophilic, Gram-negative bacterium that was isolated from terrestrial hot spring .

Gram-negative
motile
rod-shaped
microaerophile
thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Aquificota*
	Class	*Aquificia*
	Order	*Aquificales*
	Family	*Hydrogenothermaceae*
	Genus	*Sulfurihydrogenibium*
	Species	**Sulfurihydrogenibium rodmanii**
	Full Scientific Name (LPSN)	Sulfurihydrogenibium rodmanii O'Neill et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32396]	Gram stain	negative

[Ref.: #32396]	Cell length	2 µm

[Ref.: #32396]	Cell width	0.5 µm

[Ref.: #32396]	Cell shape	rod-shaped

[Ref.: #32396]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #8154]

Culture medium

MS-MEDIUM (MODIFIED) (DSMZ Medium 1145)

[Ref.: #8154]

Culture medium growth

[Ref.: #8154]

Culture medium link

Medium recipe at MediaDive

[Ref.: #8154]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #8154]	growth	68 °C
[Ref.: #32396]	growth	55-80 °C
[Ref.: #32396]	optimum	75 °C

	pH	Kind of pH		pH
[Ref.: #32396]			optimum	6
[Ref.: #32396]			growth	5-7.2

Information on physiology and metabolism Physiology and metabolism

[Ref.: #8154]	Oxygen tolerance	microaerophile
[Ref.: #32396]	Oxygen tolerance	microaerophile

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32396]		NaCl		growth	0-0.9	%

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8154]	Sample type/isolated from	terrestrial hot spring (74 °C, pH 6.0)
[Ref.: #8154]	Geographic location (country and/or sea, region)	Kamchatka Peninsula, Uzon Caldera
[Ref.: #8154]	Country	Russia
[Ref.: #8154]	Country ISO 3 Code	RUS
[Ref.: #8154]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Thermal spring
#Environmental	#Terrestrial	-
#Condition	#Thermophilic (>45°C)	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM259502 (>99% sequence identity) for Sulfurihydrogenibium rodmanii from Microbeatlas

Aquatic Samples	75
Soil Samples
Animal Samples	2
Plant Samples
Total Samples	77

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8154]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8154]	Sulfurihydrogenibium rodmanii partial 16S rRNA gene, type strain UZ3-5T	AM259502	1444	GenBank ENA	380763 tax ID

[Ref.: #8154]	GC-content	35.0 mol%
[Ref.: #32396]	GC-content	35 mol%

Availability in culture collections External links

[Ref.: #8154]

Culture collection no.

DSM 19533, ATCC BAA-1536, OCM 900

[Ref.: #70198]

SI-ID 401128

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Sulfurihydrogenibium kristjanssonii sp. nov., a hydrogen- and sulfur-oxidizing thermophile isolated from a terrestrial Icelandic hot spring.	Flores GE, Liu Y, Ferrera I, Beveridge TJ, Reysenbach AL	Int J Syst Evol Microbiol	10.1099/ijs.0.65570-0	2008	*
Phylogeny	Sulfurihydrogenibium rodmanii sp. nov., a sulfur-oxidizing chemolithoautotroph from the Uzon Caldera, Kamchatka Peninsula, Russia, and emended description of the genus Sulfurihydrogenibium.	O'Neill AH, Liu Y, Ferrera I, Beveridge TJ, Reysenbach AL	Int J Syst Evol Microbiol	10.1099/ijs.0.65431-0	2008	*

References

#8154

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19533

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32396

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28620 (see below)

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#70198

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401128.1 )

#28620

IJSEM 1147 2008 ( DOI 10.1099/ijs.0.65431-0 , PubMed 18450704 )

* These data were automatically processed and therefore are not curated

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