Name: Xenorhabdus miraniensis Q1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5198

Type strain:

Species: Xenorhabdus miraniensis

Strain Designation: Q1

Culture col. no.: DSM 17902, CIP 109069

Strain history: <- P. Tailliez; Q1 <- N. E. Boemare <- R. Akhurst

NCBI tax ID(s): 351674 (species)

SI-ID 297373

CIP 109069, DSM 17902

Section

Xenorhabdus miraniensis Q1 is a mesophilic, motile animal pathogen that was isolated from Steinernema species.

motile
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Morganellaceae*
	Genus	*Xenorhabdus*
	Species	**Xenorhabdus miraniensis**
	Full Scientific Name (LPSN)	Xenorhabdus miraniensis Tailliez et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.976

[Ref.: #69480]	Motility	yes Confidence in %98.118

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7233]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #7233]

Culture medium growth

[Ref.: #7233]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7233]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #7233]			growth	30 °C

[Ref.: #7233]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.701

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7233]	Sample type/isolated from	Steinernema species
[Ref.: #7233]	Host species	Steinernema
[Ref.: #7233]	Geographic location (country and/or sea, region)	Queensland, Mirani
[Ref.: #7233]	Country	Australia
[Ref.: #7233]	Country ISO 3 Code	AUS
[Ref.: #7233]	Continent	Australia and Oceania
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Nematoda

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7233]	Pathogenicity (animal)	yes
[Ref.: #7233]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7233]	Xenorhabdus miraniensis strain Q1 16S ribosomal RNA gene, partial sequence	DQ211713	1481	ENA	351674 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Xenorhabdus miraniensis DSM 17902	GCA_002632615	scaffold	GenBank	351674 tax ID	*
[Ref.: #66792]	Xenorhabdus miraniensis strain DSM 17902	351674.5	wgs	PATRIC	351674 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Xenorhabdus miraniensis DSM 17902 NCBI: GCA_002632615.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Xenorhabdus miraniensis DSM 17902 NCBI: GCA_002632615.1
[Ref.: #69480]	flagellated	yes	56.215	no
[Ref.: #69480]	gram-positive	no	98.078	no
[Ref.: #69480]	anaerobic	no	97.646	no
[Ref.: #69480]	aerobic	yes	87.419	no
[Ref.: #69480]	halophile	no	86.876	no
[Ref.: #69480]	spore-forming	no	93.572	no
[Ref.: #69480]	glucose-util	yes	92.439	no
[Ref.: #69480]	thermophile	no	98.482	no
[Ref.: #69480]	motile	yes	86.96	no
[Ref.: #69480]	glucose-ferment	yes	86.428	no

Availability in culture collections External links

[Ref.: #7233]

Culture collection no.

DSM 17902, CIP 109069

[Ref.: #74690]

SI-ID 297373

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Description of Xenorhabdus khoisanae sp. nov., the symbiont of the entomopathogenic nematode Steinernema khoisanae.	Ferreira T, van Reenen CA, Endo A, Sproer C, Malan AP, Dicks LMT	Int J Syst Evol Microbiol	10.1099/ijs.0.049049-0	2013	*
Phylogeny	New insight into diversity in the genus Xenorhabdus, including the description of ten novel species.	Tailliez P, Pages S, Ginibre N, Boemare N	Int J Syst Evol Microbiol	10.1099/ijs.0.64287-0	2006	*

References

#7233

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17902

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74690

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID297373.1 )

* These data were automatically processed and therefore are not curated

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Xenorhabdus miraniensis DSM 17902

Xenorhabdus miraniensis DSM 17902

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