Name: Xenorhabdus nematophila subsp. poinarii G1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5186

Type strain:

Species: Xenorhabdus nematophila subsp. poinarii

Strain Designation: G1

Culture col. no.: DSM 4768, ATCC 35272, UQM 2216, CIP 103468

Strain history: CIP <- 1991, DSMZ, Xenorhabdus nematophilus subsp. poinarii <- Queensland Univ., Australia: strain G1

NCBI tax ID(s): 40577 (species)

SI-ID 40962

ATCC 35272, ACM 2216, CIP 103468, DSM 4768, CCM 3687

Section

Xenorhabdus nematophila subsp. poinarii G1 is a mesophilic bacterium that was isolated from nematode Steinernema glaseri.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Morganellaceae*
	Genus	*Xenorhabdus*
	Species	Xenorhabdus nematophila subsp. poinarii
	Full Scientific Name (LPSN)	Xenorhabdus nematophila subsp. poinarii corrig. Akhurst 1983

	Synonym	Xenorhabdus nematophilus subsp. poinarii
	Synonym	**Xenorhabdus poinarii**

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1815]

Culture medium

XENORHABDUS MEDIUM (DSMZ Medium 423)

[Ref.: #1815]

Culture medium growth

[Ref.: #1815]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1815]

Culture medium composition

expand / minimize

[Ref.: #1815]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #1815]

Culture medium growth

[Ref.: #1815]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1815]

Culture medium composition

expand / minimize

[Ref.: #35547]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #35547]

Culture medium growth

[Ref.: #35547]

Culture medium composition

expand / minimize

[Ref.: #36926]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #36926]

Culture medium growth

[Ref.: #36926]

Culture medium composition

expand / minimize

[Ref.: #121923]

Culture medium

CIP Medium 3

[Ref.: #121923]

Culture medium growth

[Ref.: #121923]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #1815]	growth	30 °C
[Ref.: #35547]	growth	25 °C
[Ref.: #36926]	growth	25 °C

[Ref.: #1815]	Temperature range	mesophilic
[Ref.: #35547]	Temperature range	mesophilic
[Ref.: #36926]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68369]		indole ChEBI	no	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	beta-glucosidase	-	3.2.1.21	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #1815]	23322	-	-	+/-	-	-	-	+	-	+	-	+	-	+	+	+	-	-	+/-	+	-	+/-
[Ref.: #1815]	23312	-	-	+	+	-	-	+	-	+	-	+	-	+	+	+	+	-	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1815]	Sample type/isolated from	nematode Steinernema glaseri
[Ref.: #1815]	Host species	Steinernema glaseri

[Ref.: #121923]	Sample type/isolated from	Animal, Associated with Steinernema (syn. Neoaplectana) glaseri and an undescribed Steinernema sp., isolate NC513
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Nematoda

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X82253 (>99% sequence identity) for Xenorhabdus from Microbeatlas

Aquatic Samples	4
Soil Samples	13
Animal Samples	12
Plant Samples	2
Total Samples	31

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1815]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #121923]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Xenorhabdus poinarii gene for 16S rRNA, partial sequence, strain: DSM 4768	D78010	1476	ENA	40577 tax ID	*
[Ref.: #20218]	X.poinarii 16S rRNA gene (DSM 4768)	X82253	1498	ENA	40577 tax ID	*

Availability in culture collections External links

[Ref.: #1815]

Culture collection no.

DSM 4768, ATCC 35272, UQM 2216, CIP 103468

[Ref.: #74678]

SI-ID 40962

References

#1815

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4768

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35547 ; Curators of the CIP;
#36926 ; Curators of the CIP;

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#74678

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID40962.1 )

#121923 Collection of Institut Pasteur ; Curators of the CIP; CIP 103468
* These data were automatically processed and therefore are not curated

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