Name: Tatumella punctata BD 876
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5178

Type strain:

Species: Tatumella punctata

Strain Designation: BD 876

Culture col. no.: DSM 13700, ATCC 31626, CCUG 30159, CIP 105598, FERM P-5452, JCM 8885, LMG 22050, SHS 2006, BCRC 14443, CCM 4320, KCTC 12452, KCTC 2747, NCPPB 3820

Strain history: B. Kageyama SHS 2006.

NCBI tax ID(s): 399969 (species)

Section

Tatumella punctata BD 876 is an aerobe, mesophilic bacterium that was isolated from mandarin orange.

aerobe
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Erwiniaceae*
	Genus	*Tatumella*
	Species	**Tatumella punctata**
	Full Scientific Name (PNU)	Tatumella punctata (Kageyama et al. 1992) Brady et al. 2010

Synonym

Pantoea punctata

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5123]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)

[Ref.: #5123]

Culture medium growth

[Ref.: #5123]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #5123]

Culture medium composition

expand / minimize

[Ref.: #35847]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #35847]

Culture medium growth

[Ref.: #35847]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #5123]	growth	28 °C
[Ref.: #35847]	growth	25 °C
[Ref.: #49943]	growth	30 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #5123]	Temperature range	mesophilic
[Ref.: #35847]	Temperature range	mesophilic
[Ref.: #49943]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #49943]

Oxygen tolerance

aerobe

[Ref.: #5123]

Name of produced compound

2,5 diketo-D-gulonic acid

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5123]	Sample type/isolated from	mandarin orange
[Ref.: #5123]	Country	Japan
[Ref.: #5123]	Country ISO 3 Code	JPN
[Ref.: #5123]	Continent	Asia

[Ref.: #49943]	Sample type/isolated from	Mandarin orange
[Ref.: #49943]	Country	Japan
[Ref.: #49943]	Country ISO 3 Code	JPN
[Ref.: #49943]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Mandarin orange
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Plant

#Fruit (Seed)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5123]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5123]	Pantoea punctata strain LMG 22050 16S ribosomal RNA gene, partial sequence	EF688006	1494	ENA	399969 tax ID
[Ref.: #5123]	Pantoea punctata strain DSM 13700 16S ribosomal RNA gene, partial sequence	FJ756351	1505	ENA	399969 tax ID
[Ref.: #20218]	Pantoea punctata strain CIP 105598 16S ribosomal RNA gene, complete sequence	JN175342	1527	ENA	399969 tax ID	*
[Ref.: #20218]	Pantoea punctata strain JCM 8885 16S ribosomal RNA gene, partial sequence	DQ838097	1305	ENA	399969 tax ID	*

[Ref.: #5123]	GC-content	50.7 mol%
[Ref.: #67770]	GC-content	50.7 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	50.3 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #5123]

Culture collection no.

DSM 13700, ATCC 31626, CCUG 30159, CIP 105598, FERM P-5452, JCM 8885, LMG 22050, SHS 2006, BCRC 14443, CCM 4320, KCTC 12452, KCTC 2747, NCPPB 3820

[Ref.: #20218]

Associated Passport(s) in StrainInfo

108394, 108392, 140926, 153671, 108395, 184391, 370434

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Transfer of Pantoea citrea, Pantoea punctata and Pantoea terrea to the genus Tatumella emend. as Tatumella citrea comb. nov., Tatumella punctata comb. nov. and Tatumella terrea comb. nov. and description of Tatumella morbirosei sp. nov.	Brady CL, Venter SN, Cleenwerck I, Vandemeulebroecke K, De Vos P, Coutinho TA	Int J Syst Evol Microbiol	10.1099/ijs.0.012070-0	2009	*
Phylogeny	Pantoea punctata sp. nov., Pantoea citrea sp. nov., and Pantoea terrea sp. nov. isolated from fruit and soil samples.	Kageyama B, Nakae M, Yagi S, Sonoyama T	Int J Syst Bacteriol	10.1099/00207713-42-2-203	1992	*

References

#5123

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13700

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35847 ; Curators of the CIP;
#49943 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30159
#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
* These data were automatically processed and therefore are not curated

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