Name: Serratia marcescens KRED
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5167

Type strain:

Species: Serratia marcescens

Strain Designation: KRED

Culture col. no.: DSM 17174, CIP 107489, JCM 11315, CCUG 53879, CCM 7122

Strain history: CIP <- 2002, R. Iriye, Shinshu Univ., Nagano, Japan: strain KRED

NCBI tax ID(s): 615 (species)

SI-ID 100951

CIP 107489, JCM 11315, DSM 17174, CCM 7122, ATCC BAA-885, CCUG 53879, BCRC 17595, CCRC 17595, LMG 25713

Special Collections

Other strains from Serratia marcescens

Section

Serratia marcescens KRED is an aerobe, Gram-negative bacterium that was isolated from activated sludge of waste water treatment tank.

Gram-negative
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Yersiniaceae*
	Genus	*Serratia*
	Species	**Serratia marcescens**
	Full Scientific Name (LPSN)	Serratia marcescens Bizio 1823 (Approved Lists 1980)

Synonym

Serratia marcescens subsp. sakuensis

Information on morphological and physiological properties Morphology

[Ref.: #120786]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #120786]	Cell shape	rod-shaped

[Ref.: #120786]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6808]

Culture medium

CASO AGAR (MERCK 105458) (DSMZ Medium 220)

[Ref.: #6808]

Culture medium growth

[Ref.: #6808]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6808]

Culture medium composition

expand / minimize

[Ref.: #42106]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #42106]

Culture medium growth

[Ref.: #42106]

Culture medium composition

expand / minimize

[Ref.: #120786]

Culture medium

CIP Medium 72

[Ref.: #120786]

Culture medium growth

[Ref.: #120786]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #6808]		growth	28 °C
[Ref.: #42106]		growth	30 °C
[Ref.: #60049]		growth	30-37 °C
[Ref.: #67770]		growth	30 °C
[Ref.: #120786]		growth	10-41 °C
[Ref.: #120786]	no	growth	5 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #60049]	Oxygen tolerance	aerobe
[Ref.: #120786]	Oxygen tolerance	facultative anaerobe

[Ref.: #67770]

Observation

quinones: Q-8

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #120786]	citrate ChEBI	+	carbon source
[Ref.: #120786]	glucose ChEBI	+	fermentation
[Ref.: #120786]	glucose ChEBI	+	degradation
[Ref.: #120786]	lactose ChEBI	-	fermentation
[Ref.: #120786]	malonate ChEBI	-	assimilation
[Ref.: #120786]	mannitol ChEBI	+	fermentation
[Ref.: #120786]	nitrate ChEBI	+	reduction
[Ref.: #120786]	nitrite ChEBI	-	reduction
[Ref.: #120786]	sodium thiosulfate ChEBI	-	builds gas from

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #120786]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite production	Metabolite	Production
[Ref.: #120786]		indole ChEBI	no

	Physiological tests	Metabolite	Voges-Proskauer-test	Methylred-test
[Ref.: #120786]		acetoin ChEBI	+
[Ref.: #120786]		glucose ChEBI		-

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120786]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #120786]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #120786]	caseinase	+	3.4.21.50
[Ref.: #120786]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120786]	gelatinase	+
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #120786]	lysine decarboxylase	+	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120786]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #120786]	oxidase	-
[Ref.: #120786]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #120786]	tryptophan deaminase	-
[Ref.: #120786]	tween esterase	+
[Ref.: #120786]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120786]	2238	not determinedn.d.	+	+	+	+	+	-	-	+	-	+	+	-	-	-	-	-	-	+	+	+	-	-	-	-	+	-	-	+	+	-	-	+	+	+	-	-	+	+	-	+	+	-	-	-	-	-	-	-	-	+	+	+	-	+	+	+	+	+	-	+	+	+	+	+	-	+	-	-	-	-	-	-	+	+	-	+	+	+	-	+	+	-	+	-	-	-	+	-	+	+	+	+	+	+	+	-	-	+	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #120786]	10393	-	+	+	+	+	+	-	-	+	-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6808]	Sample type/isolated from	activated sludge of waste water treatment tank
[Ref.: #6808]	Geographic location (country and/or sea, region)	Saku, Nagano
[Ref.: #6808]	Country	Japan
[Ref.: #6808]	Country ISO 3 Code	JPN
[Ref.: #6808]	Continent	Asia

[Ref.: #60049]	Sample type/isolated from	Water,domestic wastewater treatment tank
[Ref.: #60049]	Geographic location (country and/or sea, region)	Nagano,Saku,Komaba
[Ref.: #60049]	Country	Japan
[Ref.: #60049]	Country ISO 3 Code	JPN
[Ref.: #60049]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Suspended water of a domestic wastewater treatment tank
[Ref.: #67770]	Geographic location (country and/or sea, region)	Komaba, Saku, Nagano Pref.
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia

[Ref.: #120786]	Sample type/isolated from	Environment, Domestic wastewater treatment tank
[Ref.: #120786]	Geographic location (country and/or sea, region)	Saku
[Ref.: #120786]	Country	Japan
[Ref.: #120786]	Country ISO 3 Code	JPN
[Ref.: #120786]	Continent	Asia
[Ref.: #120786]	Isolation date	1992
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	#Container (Reservoir)
#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Wastewater

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AB061685 (>99% sequence identity) for Serratia marcescens from Microbeatlas

Aquatic Samples	2336
Soil Samples	1270
Animal Samples	18103
Plant Samples	995
Total Samples	22704

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6808]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #120786]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6808]	Serratia marcescens gene for 16S rRNA, partial sequence	AB061685	1532	GenBank ENA	211760 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Serratia marcescens DSM 17174	GCA_004684145	contig	GenBank ENA	615 tax ID
[Ref.: #66792]	Serratia marcescens subsp. sakuensis strain DSM 17174	211760.18	wgs	PATRIC	615 tax ID	*

[Ref.: #6808]	GC-content	58 mol%
[Ref.: #67770]	GC-content	58 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Serratia marcescens subsp. sakuensis strain DSM 17174 PATRIC: 211760.18
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.299	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	89.17	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	54.314	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.5	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	78.966	no

Availability in culture collections External links

[Ref.: #6808]

Culture collection no.

DSM 17174, CIP 107489, JCM 11315, CCUG 53879, CCM 7122

[Ref.: #74659]

SI-ID 100951

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Genome-based analyses indicate that Serratia marcescens subsp. marcescens and Serratia marcescens subsp. sakuensis do not merit separation to subspecies status.	Doijad S, Chakraborty T	Int J Syst Evol Microbiol	10.1099/ijsem.0.003706	2019	*
Phylogeny	Spore-forming Serratia marcescens subsp. sakuensis subsp. nov., isolated from a domestic wastewater treatment tank.	Ajithkumar B, Ajithkumar VP, Iriye R, Doi Y, Sakai T	Int J Syst Evol Microbiol	10.1099/ijs.0.02158-0	2003	*
Phylogeny	Serratia nematodiphila sp. nov., associated symbiotically with the entomopathogenic nematode Heterorhabditidoides chongmingensis (Rhabditida: Rhabditidae).	Zhang CX, Yang SY, Xu MX, Sun J, Liu H, Liu JR, Liu H, Kan F, Sun J, Lai R, Zhang KY	Int J Syst Evol Microbiol	10.1099/ijs.0.65718-0	2009	*

References

#6808

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17174

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#42106 ; Curators of the CIP;
#60049 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53879

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#74659

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID100951.1 )

#120786 Collection of Institut Pasteur ; Curators of the CIP; CIP 107489
* These data were automatically processed and therefore are not curated

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Serratia marcescens subsp. sakuensis strain DSM 17174

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