Name: Serratia ureilytica DSM 16952
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5166

Type strain:

Species: Serratia ureilytica

Culture col. no.: DSM 16952, CCUG 50595, LMG 22860, NIVA NiVa51, JCM 13046, BCRC 17594, CCM 7336, CIP 108937, JCM 16474, NiVa 51

Strain history: CIP <- 2005, CCUG <- 2005, B. Bhadra, North Bengal Univ., Siliguri, India: strain NiVa 51

NCBI tax ID(s): 300181 (species)

SI-ID 136003

LMG 22860, CCUG 50595, DSM 16952, CIP 108937, CCM 7336, BCRC 17594, CCRC 17594, JCM 16474, CCUG 55856

Special Collections

Other strains from Serratia ureilytica

Section

Serratia ureilytica DSM 16952 is an aerobe, Gram-negative, motile bacterium that was isolated from water from Torsa River.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Yersiniaceae*
	Genus	*Serratia*
	Species	**Serratia ureilytica**
	Full Scientific Name (LPSN)	Serratia ureilytica Bhadra et al. 2005

Information on morphological and physiological properties Morphology

[Ref.: #31489]	Gram stain	negative
[Ref.: #123743]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %100

[Ref.: #31489]	Cell length	0.9 µm

[Ref.: #31489]	Cell width	0.85 µm

[Ref.: #31489]	Cell shape	rod-shaped
[Ref.: #123743]	Cell shape	rod-shaped

[Ref.: #31489]	Motility	yes
[Ref.: #123743]	Motility	yes

[Ref.: #123743]

Hemolysis ability

[Ref.: #31489]

Pigment production

Information on culture and growth conditions Culture and growth conditions

[Ref.: #33270]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33270]

Culture medium growth

[Ref.: #33270]

Culture medium composition

expand / minimize

[Ref.: #123743]

Culture medium

CIP Medium 72

[Ref.: #123743]

Culture medium growth

[Ref.: #123743]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #31489]	growth	08-43 °C
[Ref.: #31489]	optimum	25.5 °C
[Ref.: #33270]	growth	30 °C
[Ref.: #67770]	growth	37 °C

	pH	Kind of pH		pH
[Ref.: #31489]			optimum	8
[Ref.: #31489]			growth	05-11

Information on physiology and metabolism Physiology and metabolism

[Ref.: #31489]	Oxygen tolerance	aerobe
[Ref.: #123743]	Oxygen tolerance	facultative anaerobe

[Ref.: #31489]

Ability of spore formation

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #31489]		NaCl		growth	0-1.4	%
[Ref.: #31489]		NaCl		optimum	0.7	%

[Ref.: #31489]

Observation

aggregates in clumps

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #31489]	4-hydroxy-L-proline ChEBI	+	carbon source
[Ref.: #31489]	acetate ChEBI	+	carbon source
[Ref.: #31489]	alanine ChEBI	+	carbon source
[Ref.: #68371]	amygdalin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	arbutin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31489]	arginine ChEBI	+	carbon source
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	erythritol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31489]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gentiobiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycerol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31489]	histidine ChEBI	+	carbon source
[Ref.: #68371]	inulin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	lactose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31489]	melibiose ChEBI	+	carbon source
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31489]	nitrate ChEBI	+	reduction
[Ref.: #123743]	nitrate ChEBI	+	reduction
[Ref.: #123743]	nitrite ChEBI	-	reduction
[Ref.: #31489]	ornithine ChEBI	+	carbon source
[Ref.: #31489]	phenylalanine ChEBI	+	carbon source
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31489]	proline ChEBI	+	carbon source
[Ref.: #68371]	raffinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31489]	ribitol ChEBI	+	carbon source
[Ref.: #68371]	ribitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31489]	serine ChEBI	+	carbon source
[Ref.: #31489]	sorbitol ChEBI	+	carbon source
[Ref.: #68371]	starch ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #31489]	succinate ChEBI	+	carbon source
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31489]	threonine ChEBI	+	carbon source
[Ref.: #68371]	trehalose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	xylitol ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #31489]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #123743]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #123743]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #31489]	catalase	+	1.11.1.6
[Ref.: #123743]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #123743]	lysine decarboxylase	+	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #123743]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #123743]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #31489]	urease	+	3.5.1.5
[Ref.: #123743]	urease	+	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #123743]	11430	not determinedn.d.	+	+	-	-	+	-	-	+	-	+	+	+	+	-	-	-	+	+	+	-	-	+	-	+	+	+	+/-	+	-	-	+	+	-	-	-	-	-	+	-	-	+	-	-	-	-	+	+	+	+

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #123743]	11561	-	+	+	+	+	+	+	-	+	-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6664]	Sample type/isolated from	water from Torsa River
[Ref.: #6664]	Geographic location (country and/or sea, region)	Jalpaiguri, West Bengal
[Ref.: #6664]	Country	India
[Ref.: #6664]	Country ISO 3 Code	IND
[Ref.: #6664]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Torsa River
[Ref.: #67770]	Geographic location (country and/or sea, region)	northern West Bengal
[Ref.: #67770]	Country	India
[Ref.: #67770]	Country ISO 3 Code	IND
[Ref.: #67770]	Continent	Asia

[Ref.: #123743]	Sample type/isolated from	Environment, Water, river
[Ref.: #123743]	Geographic location (country and/or sea, region)	Torsa River, Hasimara, West Bengal
[Ref.: #123743]	Country	India
[Ref.: #123743]	Country ISO 3 Code	IND
[Ref.: #123743]	Continent	Asia
[Ref.: #123743]	Isolation date	2002
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#River (Creek)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence LC507943 (>99% sequence identity) for Serratia marcescens from Microbeatlas

Aquatic Samples	2336
Soil Samples	1270
Animal Samples	18103
Plant Samples	995
Total Samples	22704

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6664]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #123743]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Serratia ureilytica JCM 13046 gene for 16S rRNA, partial sequence	LC507943	1464	GenBank ENA	300181 tax ID
[Ref.: #31489]	Serratia ureilytica 16S rRNA gene, type strain NiVa 51T	AJ854062	1505	GenBank ENA	300181 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Serratia ureilytica CCUG:50595	GCA_013375155	contig	GenBank ENA	300181 tax ID
[Ref.: #66792]	Serratia ureilytica strain CCUG:50595	300181.29	wgs	PATRIC	300181 tax ID	*

[Ref.: #31489]	GC-content	60 mol%
[Ref.: #67770]	GC-content	60 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Serratia ureilytica strain CCUG:50595 PATRIC: 300181.29
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	100	yes
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.651	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	88.92	yes
[Ref.: #69480]	aerobic	aerobicⓘ	no	54.881	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.5	no
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	77.992	no

Availability in culture collections External links

[Ref.: #6664]

Culture collection no.

DSM 16952, CCUG 50595, LMG 22860, NIVA NiVa51, JCM 13046, BCRC 17594, CCM 7336, CIP 108937, JCM 16474, NiVa 51

[Ref.: #74658]

SI-ID 136003

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Serratia nematodiphila sp. nov., associated symbiotically with the entomopathogenic nematode Heterorhabditidoides chongmingensis (Rhabditida: Rhabditidae).	Zhang CX, Yang SY, Xu MX, Sun J, Liu H, Liu JR, Liu H, Kan F, Sun J, Lai R, Zhang KY	Int J Syst Evol Microbiol	10.1099/ijs.0.65718-0	2009	*
Phylogeny	Serratia ureilytica sp. nov., a novel urea-utilizing species.	Bhadra B, Roy P, Chakraborty R	Int J Syst Evol Microbiol	10.1099/ijs.0.63674-0	2005	*

References

#6664

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16952

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#31489

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #27787 (see below)

#33270 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#74658

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID136003.1 )

#123743 Collection of Institut Pasteur ; Curators of the CIP; CIP 108937

#27787

IJSEM 2155 2005 ( DOI 10.1099/ijs.0.63674-0 , PubMed 16166724 )

* These data were automatically processed and therefore are not curated

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Serratia ureilytica strain CCUG:50595

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Change proposal