Name: Hydrogenobaculum acidophilum 3H-1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 513

Type strain:

Species: Hydrogenobaculum acidophilum

Strain Designation: 3H-1

Culture col. no.: DSM 11251, JCM 8795, ATCC BAA-480

Strain history: S. Shima 3H-1.

NCBI tax ID(s): 34092 (species)

SI-ID 49057

DSM 11251, JCM 8795, ATCC BAA-480

Section

Hydrogenobaculum acidophilum 3H-1 is a thermophilic bacterium that was isolated from mud sample from a solfataric field.

thermophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Aquificota*
	Class	*Aquificia*
	Order	*Aquificales*
	Family	*Aquificaceae*
	Genus	*Hydrogenobaculum*
	Species	**Hydrogenobaculum acidophilum**
	Full Scientific Name (LPSN)	Hydrogenobaculum acidophilum (Shima and Suzuki 1993) Stöhr et al. 2001

Synonym

Hydrogenobacter acidophilus

Information on culture and growth conditions Culture and growth conditions

[Ref.: #4260]

Culture medium

HYDROGENOBACTER ACIDOPHILUS MEDIUM (DSMZ Medium 743)

[Ref.: #4260]

Culture medium growth

[Ref.: #4260]

Culture medium link

Medium recipe at MediaDive

[Ref.: #4260]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #4260]			growth	65 °C
[Ref.: #67770]			growth	65 °C

[Ref.: #4260]	Temperature range	thermophilic
[Ref.: #67770]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67770]

Observation

quinones: Methionaquinone (MTK)-7(H₄)

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #4260]	Sample type/isolated from	mud sample from a solfataric field
[Ref.: #4260]	Geographic location (country and/or sea, region)	Tsumagoi
[Ref.: #4260]	Country	Japan
[Ref.: #4260]	Country ISO 3 Code	JPN
[Ref.: #4260]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Mud sample from a solfataric field in Tsumagoi
[Ref.: #67770]	Country	Japan
[Ref.: #67770]	Country ISO 3 Code	JPN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Volcanic

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #4260]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #4260]	Hydrogenobaculum acidophilum gene for 16S rRNA	D16296	1436	ENA	34092 tax ID

[Ref.: #4260]	GC-content	35 mol%
[Ref.: #67770]	GC-content	35 mol%	high performance liquid chromatography (HPLC)

Availability in culture collections External links

[Ref.: #4260]

Culture collection no.

DSM 11251, JCM 8795, ATCC BAA-480

[Ref.: #70192]

SI-ID 49057

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Hydrogenothermus marinus gen. nov., sp. nov., a novel thermophilic hydrogen-oxidizing bacterium, recognition of Calderobacterium hydrogenophilum as a member of the genus Hydrogenobacter and proposal of the reclassification of Hydrogenobacter acidophilus as Hydrogenobaculum acidophilum gen. nov., comb. nov., in the phylum 'Hydrogenobacter/Aquifex'.	Stohr R, Waberski A, Volker H, Tindall BJ, Thomm M	Int J Syst Evol Microbiol	10.1099/00207713-51-5-1853	2001	*
Phylogeny	The phylogenetic position of Hydrogenobacter acidophilus based on 16S rRNA sequence analysis.	Shima S, Yanagi M, Saiki H	FEMS Microbiol Lett	10.1111/j.1574-6968.1994.tb06877.x	1994	*

References

#4260

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11251

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#70192

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID49057.1 )

* These data were automatically processed and therefore are not curated

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