Hydrogenobaculum acidophilum (DSM 11251, JCM 8795, 3H-1)

Name: Hydrogenobaculum acidophilum (DSM 11251, JCM 8795, 3H-1)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 513

Type strain

Strain Designation 3H-1

Culture col. no. DSM 11251 JCM 8795 3H-1 ATCC BAA-480

NCBI tax ID(s) 34092

Special Collections DSMZ JCM

History DSMZ <- JCM <- S. Shima, strain 3H-1 JCM <-- S. Shima 3H-1.

Links

Hydrogenobaculum acidophilum 3H-1 is a bacterium that was isolated from mud sample from a solfataric field.

16S sequence Bacteria

Name and taxonomic classification

SI-ID 49057

DSM 11251,JCM 8795,ATCC BAA-480

@ref 20215

Last LPSN update 2026-05-29 08:25:03

Domain Bacteria

Phylum Aquificota

Class Aquificia

Order Aquificales

Family Aquificaceae

Genus Hydrogenobaculum

Species Hydrogenobaculum acidophilum

Full scientific name Hydrogenobaculum acidophilum (Shima and Suzuki 1993) Stöhr et al. 2001

Synonyms (1)

Hydrogenobacter acidophilus

Morphology

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
4260	HYDROGENOBACTER ACIDOPHILUS MEDIUM (DSMZ Medium 743)		Medium recipe at MediaDive	Name: HYDROGENOBACTER ACIDOPHILUS MEDIUM (DSMZ Medium 743) Composition: Sulfur 5.0 g/l (NH4)2SO4 1.0 g/l K2HPO4 1.0 g/l NaCl 1.0 g/l MgSO4 x 7 H2O 0.3 g/l FeSO4 x 7 H2O 0.001 g/l CaCl2 0.001 g/l ZnSO4 x 7 H2O 1.4e-05 g/l CoCl2 x 6 H2O 2e-06 g/l MnSO4 x 5 H2O 2e-06 g/l MoO3 2e-06 g/l H3BO3 2e-06 g/l CuSO4 x 5 H2O 1e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
4260	positive	growth	65
67770	positive	growth	65

Physiology and metabolism

Observation

67770

Observationquinones: Methionaquinone (MTK)-7(H₄)

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Volcanic

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
4260	mud sample from a solfataric field	Tsumagoi	Japan	JPN	Asia
67770	Mud sample from a solfataric field in Tsumagoi		Japan	JPN	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
4260	1	Risk group (German classification) According to TRBA 466

Sequence information

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
4260	Hydrogenobaculum acidophilum gene for 16S rRNA	D16296	1436		34092

GC content

@ref	GC-content (mol%)	Method
4260	35
67770	35	high performance liquid chromatography (HPLC)

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	The phylogenetic position of Hydrogenobacter acidophilus based on 16S rRNA sequence analysis.	Shima S, Yanagi M, Saiki H	FEMS Microbiol Lett	10.1111/j.1574-6968.1994.tb06877.x	1994
Phylogeny	Hydrogenothermus marinus gen. nov., sp. nov., a novel thermophilic hydrogen-oxidizing bacterium, recognition of Calderobacterium hydrogenophilum as a member of the genus Hydrogenobacter and proposal of the reclassification of Hydrogenobacter acidophilus as Hydrogenobaculum acidophilum gen. nov., comb. nov., in the phylum 'Hydrogenobacter/Aquifex'.	Stohr R, Waberski A, Volker H, Tindall BJ, Thomm M	Int J Syst Evol Microbiol	10.1099/00207713-51-5-1853	2001

References

#4260	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 11251
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Hydrogenobaculum acidophilum (DSM 11251, JCM 8795, 3H-1)

Name and taxonomic classification

Morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Observation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

16S sequences

GC content

Genome-based predictions

Literature

Literature

References

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