Klebsiella terrigena 84 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from drinking water.
Gram-negative oval-shaped aerobe mesophilic genome sequence 16S sequence| @ref 20215 |
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| Domain Pseudomonadati |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Klebsiella |
| Species Klebsiella terrigena |
| Full scientific name Klebsiella terrigena Izard et al. 1981 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 1203 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 37714 | MEDIUM 29- Brain heart agar | Distilled water make up to (1000.000 ml);Brain heart infusion agar (52.000 g) | |||
| 123478 | CIP Medium 29 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 94.3 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | + | fermentation | from API 20E |
| 68374 | 29016 ChEBI | arginine | - | hydrolysis | from API ID32E |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68374 | 17057 ChEBI | cellobiose | + | builds acid from | from API ID32E |
| 123478 | 16947 ChEBI | citrate | + | carbon source | |
| 68374 | 18333 ChEBI | D-arabitol | + | builds acid from | from API ID32E |
| 68374 | 18024 ChEBI | D-galacturonic acid | + | builds acid from | from API ID32E |
| 68374 | 17634 ChEBI | D-glucose | + | builds acid from | from API ID32E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68374 | 16899 ChEBI | D-mannitol | + | builds acid from | from API ID32E |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 123478 | 17234 ChEBI | glucose | + | fermentation | |
| 123478 | 17234 ChEBI | glucose | + | degradation | |
| 68374 | 30849 ChEBI | L-arabinose | + | builds acid from | from API ID32E |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68374 | 18403 ChEBI | L-arabitol | - | builds acid from | from API ID32E |
| 68374 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API ID32E |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 123478 | 17716 ChEBI | lactose | - | fermentation | |
| 68374 | 25094 ChEBI | lysine | + | degradation | from API ID32E |
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 68374 | 15792 ChEBI | malonate | + | assimilation | from API ID32E |
| 123478 | 15792 ChEBI | malonate | + | assimilation | |
| 68374 | 17306 ChEBI | maltose | + | builds acid from | from API ID32E |
| 123478 | 29864 ChEBI | mannitol | + | fermentation | |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68374 | 17268 ChEBI | myo-inositol | + | builds acid from | from API ID32E |
| 68368 | 17268 ChEBI | myo-inositol | + | fermentation | from API 20E |
| 123478 | 17632 ChEBI | nitrate | + | reduction | |
| 123478 | 16301 ChEBI | nitrite | + | reduction | |
| 68374 | 18257 ChEBI | ornithine | - | degradation | from API ID32E |
| 68374 | 18394 ChEBI | palatinose | + | builds acid from | from API ID32E |
| 68374 | Potassium 5-ketogluconate | + | builds acid from | from API ID32E | |
| 68374 | 15963 ChEBI | ribitol | + | builds acid from | from API ID32E |
| 123478 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68374 | 30911 ChEBI | sorbitol | - | builds acid from | from API ID32E |
| 68368 | 30911 ChEBI | sorbitol | + | fermentation | from API 20E |
| 68374 | 17992 ChEBI | sucrose | + | builds acid from | from API ID32E |
| 68368 | 17992 ChEBI | sucrose | + | fermentation | from API 20E |
| 68374 | 27082 ChEBI | trehalose | + | builds acid from | from API ID32E |
| 68374 | 27897 ChEBI | tryptophan | - | energy source | from API ID32E |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68374 | 16199 ChEBI | urea | - | hydrolysis | from API ID32E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | Metabolite | Is antibiotic | Is sensitive | Is resistant | |
|---|---|---|---|---|---|
| 123478 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 123478 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68374 | alpha-galactosidase | + | 3.2.1.22 | from API ID32E |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68374 | alpha-glucosidase | - | 3.2.1.20 | from API ID32E |
| 68374 | alpha-maltosidase | - | from API ID32E | |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68374 | arginine dihydrolase | - | 3.5.3.6 | from API ID32E |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 123478 | beta-galactosidase | + | 3.2.1.23 | |
| 68374 | beta-galactosidase | + | 3.2.1.23 | from API ID32E |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68374 | beta-glucosidase | + | 3.2.1.21 | from API ID32E |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 68374 | beta-glucuronidase | - | 3.2.1.31 | from API ID32E |
| 123478 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 123478 | gelatinase | - | ||
| 68368 | gelatinase | - | from API 20E | |
| 68374 | L-aspartate arylamidase | - | 3.4.11.21 | from API ID32E |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68374 | lipase | - | from API ID32E | |
| 68382 | lipase (C 14) | - | from API zym | |
| 123478 | lysine decarboxylase | + | 4.1.1.18 | |
| 68374 | lysine decarboxylase | + | 4.1.1.18 | from API ID32E |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API ID32E |
| 68382 | naphthol-AS-BI-phosphohydrolase | - | from API zym | |
| 123478 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68374 | ornithine decarboxylase | - | 4.1.1.17 | from API ID32E |
| 123478 | oxidase | - | ||
| 123478 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 123478 | tryptophan deaminase | - | ||
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 123478 | urease | - | 3.5.1.5 | |
| 68374 | urease | - | 3.5.1.5 | from API ID32E |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1203 | + | - | + | + | + | - | - | - | - | + | - | + | + | + | + | + | + | + | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 45682 | + | - | + | - | - | - | - | - | - | + | - | + | + | + | + | + | + | + | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 1203 | + | - | + | - | + | - | - | - | - | + | - | + | + | + | + | + | + | + | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 1203 | + | - | + | - | + | - | - | - | - | + | - | + | + | + | + | + | + | + | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| @ref | ODC | ADH (Arg) | LDC (Lys) | URE | LARL | GAT | 5KG | LipaseLIP | Phenol red (Acidification)RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | N-Acetyl-beta-Glucosaminidasebeta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alpha-MaltosidasealphaMAL | L-aspartic acid arylamidaseAspA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 45682 | - | - | + | - | - | + | + | - | + | + | + | + | + | + | - | + | - | - | + | + | + | + | + | - | + | + | + | + | + | - | - | - |
Global distribution of 16S sequence Y17658 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | ASM653972v1 assembly for Raoultella terrigena NBRC 14941 | contig | 577 | 68.56 | ||||
| 66792 | 28863_D01 assembly for Raoultella terrigena NCTC13038 | contig | 577 | 39.93 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Klebsiella terrigena strain ATCC 33257T 16S ribosomal RNA gene, partial sequence | AF129442 | 1436 | 577 | ||
| 20218 | Klebsiella terrigena 16S rRNA gene, strain ATCC33257T, partial | Y17658 | 1454 | 577 | ||
| 20218 | Raoultella terrigena gene for 16S rRNA, partial sequence, strain: NBRC 14941 | AB680714 | 1467 | 577 | ||
| 67770 | Raoultella terrigena gene for 16S ribosomal RNA, partial sequence, strain: JCM 1687 | LC060919 | 1464 | 577 | ||
| 124043 | Raoultella terrigena strain NBRC 14941 16S ribosomal RNA gene, partial sequence. | KP764199 | 1463 | 577 | ||
| 124043 | Raoultella terrigena strain ATCC 33257 16S ribosomal RNA gene, partial sequence. | MG846020 | 1502 | 577 | ||
| 124043 | Raoultella terrigena strain ATCC 33257(T) 16S ribosomal RNA gene, partial sequence. | OR966876 | 1464 | 577 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 94.30 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 71.40 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 99.10 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 87.40 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 97.41 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 87.65 | no |
| 125438 | aerobic | aerobicⓘ | no | 55.81 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.50 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 67.35 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| KpSC-ID: a multiplex real-time PCR assay for the simultaneous detection of the Klebsiella pneumoniae species complex and specific identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae and Klebsiella variicola. | McAndrew G, Barbier E, Rodrigues C, Piveteau P, Brisse S, Reddington K. | Microbiology (Reading) | 10.1099/mic.0.001587 | 2025 | ||
| Lighting the Path: Raman Spectroscopy's Journey Through the Microbial Maze. | Salbreiter M, Frempong SB, Even S, Wagenhaus A, Girnus S, Rosch P, Popp J. | Molecules | 10.3390/molecules29245956 | 2024 | ||
| Phylogeny | Siamese Networks for Clinically Relevant Bacteria Classification Based on Raman Spectroscopy. | Contreras J, Mostafapour S, Popp J, Bocklitz T. | Molecules | 10.3390/molecules29051061 | 2024 | |
| Probiotic Enterococcus mundtii Isolate Protects the Model Insect Tribolium castaneum against Bacillus thuringiensis. | Grau T, Vilcinskas A, Joop G. | Front Microbiol | 10.3389/fmicb.2017.01261 | 2017 | ||
| Metabolism | Bacterial community dynamics during start-up of a trickle-bed bioreactor degrading aromatic compounds. | Stoffels M, Amann R, Ludwig W, Hekmat D, Schleifer KH. | Appl Environ Microbiol | 10.1128/aem.64.3.930-939.1998 | 1998 | |
| Phylogeny | Method for differentiating Klebsiella planticola and Klebsiella terrigena from other Klebsiella species. | Monnet D, Freney J. | J Clin Microbiol | 10.1128/jcm.32.4.1121-1122.1994 | 1994 | |
| Phylogeny | Identification of clinical isolates of indole-positive and indole-negative Klebsiella spp. | Alves MS, Dias RC, de Castro AC, Riley LW, Moreira BM. | J Clin Microbiol | 10.1128/jcm.00940-06 | 2006 | |
| Phylogeny | Recommended test panel for differentiation of Klebsiella species on the basis of a trilateral interlaboratory evaluation of 18 biochemical tests. | Hansen DS, Aucken HM, Abiola T, Podschun R. | J Clin Microbiol | 10.1128/jcm.42.8.3665-3669.2004 | 2004 | |
| Enzymology | Molecular method for detection of total coliforms in drinking water samples. | Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ. | Appl Environ Microbiol | 10.1128/aem.00546-14 | 2014 | |
| Pathogenicity | Antibiotic-resistant bacteria in the guts of insects feeding on plants: prospects for discovering plant-derived antibiotics. | Ignasiak K, Maxwell A. | BMC Microbiol | 10.1186/s12866-017-1133-0 | 2017 | |
| Phylogeny | Evaluation of the Biolog automated microbial identification system. | Klingler JM, Stowe RP, Obenhuber DC, Groves TO, Mishra SK, Pierson DL. | Appl Environ Microbiol | 10.1128/aem.58.6.2089-2092.1992 | 1992 | |
| Metabolism | SdiA of Salmonella enterica is a LuxR homolog that detects mixed microbial communities. | Michael B, Smith JN, Swift S, Heffron F, Ahmer BM. | J Bacteriol | 10.1128/jb.183.19.5733-5742.2001 | 2001 | |
| A randomized, blinded, controlled trial investigating the gastrointestinal health effects of drinking water quality. | Hellard ME, Sinclair MI, Forbes AB, Fairley CK. | Environ Health Perspect | 10.1289/ehp.01109773 | 2001 | ||
| Metabolism | Klebsiella pneumoniae produces no histamine: Raoultella planticola and Raoultella ornithinolytica strains are histamine producers. | Kanki M, Yoda T, Tsukamoto T, Shibata T. | Appl Environ Microbiol | 10.1128/aem.68.7.3462-3466.2002 | 2002 | |
| Metabolism | High 2,3-butanediol production from glycerol by Raoultella terrigena CECT 4519. | Ripoll V, Rodriguez A, Ladero M, Santos VE | Bioprocess Biosyst Eng | 10.1007/s00449-019-02266-8 | 2019 | |
| Metabolism | The Klebsiella pneumoniae O12 ATP-binding Cassette (ABC) Transporter Recognizes the Terminal Residue of Its O-antigen Polysaccharide Substrate. | Mann E, Mallette E, Clarke BR, Kimber MS, Whitfield C | J Biol Chem | 10.1074/jbc.M116.719344 | 2016 | |
| Metabolism | Bacteriophage-mediated Glucosylation Can Modify Lipopolysaccharide O-Antigens Synthesized by an ATP-binding Cassette (ABC) Transporter-dependent Assembly Mechanism. | Mann E, Ovchinnikova OG, King JD, Whitfield C | J Biol Chem | 10.1074/jbc.M115.660803 | 2015 | |
| Enzymology | Genetic, biochemical characterization and mutagenesis of the chromosomal class A beta-lactamase of Raoultella (formerly Klebsiella) terrigena. | Walckenaer E, Delmas J, Leflon-Guibout V, Bonnet R, Nicolas-Chanoine MH | Pathol Biol (Paris) | 10.1016/j.patbio.2015.05.002 | 2015 | |
| Enzymology | Evaluation of molecular techniques for identification and enumeration of Raoultella terrigena ATCC 33257 in water purifier efficacy testing. | Saha R, Bechanko R, Bestervelt LL, Donofrio RS | J Ind Microbiol Biotechnol | 10.1007/s10295-010-0917-0 | 2010 | |
| Phylogeny | Antiserum against Raoultella terrigena ATCC 33257 identifies a large number of Raoultella and Klebsiella clinical isolates as serotype O12. | Mertens K, Muller-Loennies S, Stengel P, Podschun R, Hansen DS, Mamat U | Innate Immun | 10.1177/1753425909350057 | 2010 | |
| Metabolism | Removal of two waterborne pathogenic bacterial strains by activated carbon particles prior to and after charge modification. | Busscher HJ, Dijkstra RJ, Engels E, Langworthy DE, Collias DI, Bjorkquist DW, Mitchell MD, Van der Mei HC | Environ Sci Technol | 10.1021/es061282r | 2006 |
| #1203 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2687 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #37714 | ; Curators of the CIP; |
| #45682 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 12372 Bb |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68374 | Automatically annotated from API ID32E . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #123478 | Collection of Institut Pasteur ; Curators of the CIP; CIP 80.7 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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