Klebsiella planticola CRCC 13986 is a facultative anaerobe, Gram-negative, oval-shaped bacterium that was isolated from radishroot.
Gram-negative oval-shaped facultative anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Klebsiella |
| Species Klebsiella planticola |
| Full scientific name Klebsiella planticola Bagley et al. 1982 |
| Synonyms (2) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 1288 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 38087 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 121867 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 97.835 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | + | fermentation | from API 20E |
| 68371 | 17057 ChEBI | cellobiose | + | builds acid from | from API 50CH acid |
| 121867 | 16947 ChEBI | citrate | + | carbon source | |
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68371 | 18333 ChEBI | D-arabitol | + | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | + | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68371 | 4853 ChEBI | esculin | + | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68371 | 28066 ChEBI | gentiobiose | + | builds acid from | from API 50CH acid |
| 121867 | 17234 ChEBI | glucose | + | fermentation | |
| 121867 | 17234 ChEBI | glucose | + | degradation | |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | + | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API 50CH acid |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 68371 | 17266 ChEBI | L-sorbose | + | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 121867 | 17716 ChEBI | lactose | + | fermentation | |
| 68371 | 17716 ChEBI | lactose | + | builds acid from | from API 50CH acid |
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 121867 | 15792 ChEBI | malonate | + | assimilation | |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 121867 | 29864 ChEBI | mannitol | + | fermentation | |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | + | builds acid from | from API 50CH acid |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | + | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | + | builds acid from | from API 50CH acid |
| 68368 | 17268 ChEBI | myo-inositol | + | fermentation | from API 20E |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 121867 | 17632 ChEBI | nitrate | + | reduction | |
| 68368 | 17632 ChEBI | nitrate | + | reduction | from API 20E |
| 121867 | 16301 ChEBI | nitrite | + | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | + | builds acid from | from API 50CH acid |
| 68371 | 16634 ChEBI | raffinose | + | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | + | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | + | builds acid from | from API 50CH acid |
| 121867 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68368 | 30911 ChEBI | sorbitol | + | fermentation | from API 20E |
| 68371 | 17992 ChEBI | sucrose | + | builds acid from | from API 50CH acid |
| 68368 | 17992 ChEBI | sucrose | + | fermentation | from API 20E |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68368 | 16199 ChEBI | urea | + | hydrolysis | from API 20E |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 121867 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 121867 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 121867 | beta-galactosidase | + | 3.2.1.23 | |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 121867 | catalase | + | 1.11.1.6 | |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 121867 | gelatinase | - | ||
| 68368 | gelatinase | - | from API 20E | |
| 121867 | lysine decarboxylase | + | 4.1.1.18 | |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 121867 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 121867 | oxidase | - | ||
| 121867 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 121867 | tryptophan deaminase | - | ||
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 121867 | urease | + | 3.5.1.5 | |
| 68368 | urease | + | 3.5.1.5 | from API 20E |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1288 | + | + | + | - | + | - | + | - | - | + | - | + | + | + | + | + | + | + | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | |
| 1288 | + | - | + | - | + | - | + | - | - | + | - | + | + | + | + | + | + | + | + | + | - | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 121867 | not determinedn.d. | + | - | +/- | + | + | + | - | + | - | + | + | + | + | + | + | - | + | + | + | - | + | + | +/- | +/- | + | + | + | + | + | + | + | + | - | - | + | +/- | - | - | + | - | - | - | - | + | + | - | +/- | +/- | + |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 67770 | GRPL_DRAFTv1 assembly for Raoultella planticola ATCC 33531 | contig | 1005996 | 62.09 | ||||
| 66792 | 28824_F01 assembly for Raoultella planticola NCTC12998 | contig | 575 | 0 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Klebsiella planticola strain ATCC 33531T 16S ribosomal RNA gene, partial sequence | AF129443 | 1436 | 1005996 | ||
| 20218 | Raoultella planticola strain ATCC 33531 16S ribosomal RNA gene, partial sequence | FJ971885 | 795 | 1005996 | ||
| 20218 | Klebsiella planticola 16S rRNA gene, strain ATCC33531T, partial | Y17659 | 1452 | 1005996 | ||
| 20218 | K.planticola 16S rRNA gene (strain DSM 3069 T) | X93215 | 1401 | 1005996 | ||
| 20218 | Raoultella planticola gene for 16S ribosomal RNA, partial sequence | AB004755 | 1451 | 1005996 | ||
| 20218 | Raoultella ornithinolytica gene for 16S ribosomal RNA, partial sequence | AB004756 | 1441 | 54291 | ||
| 20218 | Raoultella planticola gene for 16S rRNA, partial sequence, strain: NBRC 14939 | AB680712 | 1465 | 575 | ||
| 124043 | Raoultella planticola ATCC 33531 16S ribosomal RNA gene, partial sequence. | OP164722 | 1446 | 1005996 | ||
| 124043 | Raoultella planticola strain NBRC 14939 16S ribosomal RNA gene, partial sequence. | OP164749 | 1441 | 575 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 93.35 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 94.74 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 66.88 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 97.84 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 96.33 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 89.89 | no |
| 125438 | aerobic | aerobicⓘ | no | 58.89 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 99.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 71.44 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Bacteremic cholangitis due to Raoultella planticola complicating intrahepatic bile duct stricture 5 years post-laparoscopic cholecystectomy: a case report. | Blihar D, Phuu P, Kotelnikova S, Johnson E. | J Med Case Rep | 10.1186/s13256-021-02762-0 | 2021 | ||
| Comparative genomics reveals diverse capsular polysaccharide synthesis gene clusters in emerging Raoultella planticola. | Huang YT, Chuang WY, Ho BC, Wu ZY, Kuo RC, Ko M, Liu PY. | Mem Inst Oswaldo Cruz | 10.1590/0074-02760180192 | 2018 | ||
| Metabolism | Identification of Bacterial Species That Can Utilize Fructose-Asparagine. | Sabag-Daigle A, Wu J, Borton MA, Sengupta A, Gopalan V, Wrighton KC, Wysocki VH, Ahmer BMM. | Appl Environ Microbiol | 10.1128/aem.01957-17 | 2018 | |
| Enzymology | Necrotizing fasciitis involving the chest and abdominal wall caused by Raoultella planticola. | Kim SH, Roh KH, Yoon YK, Kang DO, Lee DW, Kim MJ, Sohn JW. | BMC Infect Dis | 10.1186/1471-2334-12-59 | 2012 | |
| Phylogeny | Identification of clinical isolates of indole-positive and indole-negative Klebsiella spp. | Alves MS, Dias RC, de Castro AC, Riley LW, Moreira BM. | J Clin Microbiol | 10.1128/jcm.00940-06 | 2006 | |
| Genes encoding s-triazine degradation are plasmid-borne in Klebsiella pneumoniae strain 99. | Karns JS, Eaton RW. | J Agric Food Chem | 10.1021/jf960464+ | 1997 | ||
| Metabolism | A new Klebsiella planticola strain (Cd-1) grows anaerobically at high cadmium concentrations and precipitates cadmium sulfide. | Sharma PK, Balkwill DL, Frenkel A, Vairavamurthy MA. | Appl Environ Microbiol | 10.1128/aem.66.7.3083-3087.2000 | 2000 | |
| Phylogeny | Method for differentiating Klebsiella planticola and Klebsiella terrigena from other Klebsiella species. | Monnet D, Freney J. | J Clin Microbiol | 10.1128/jcm.32.4.1121-1122.1994 | 1994 | |
| Phylogeny | Recommended test panel for differentiation of Klebsiella species on the basis of a trilateral interlaboratory evaluation of 18 biochemical tests. | Hansen DS, Aucken HM, Abiola T, Podschun R. | J Clin Microbiol | 10.1128/jcm.42.8.3665-3669.2004 | 2004 | |
| Phylogeny | Evaluation of the Biolog automated microbial identification system. | Klingler JM, Stowe RP, Obenhuber DC, Groves TO, Mishra SK, Pierson DL. | Appl Environ Microbiol | 10.1128/aem.58.6.2089-2092.1992 | 1992 | |
| Enzymology | Rapid method for enumeration of viable Legionella pneumophila and other Legionella spp. in water. | Delgado-Viscogliosi P, Simonart T, Parent V, Marchand G, Dobbelaere M, Pierlot E, Pierzo V, Menard-Szczebara F, Gaudard-Ferveur E, Delabre K, Delattre JM. | Appl Environ Microbiol | 10.1128/aem.71.7.4086-4096.2005 | 2005 | |
| Analysis of the type 1 pilin gene cluster fim in Salmonella: its distinct evolutionary histories in the 5' and 3' regions. | Boyd EF, Hartl DL. | J Bacteriol | 10.1128/jb.181.4.1301-1308.1999 | 1999 | ||
| The cutworm Peridroma saucia (Lepidoptera: Noctuidae) supports growth and transport of pBR322-bearing bacteria. | Armstrong JL, Porteous LA, Wood ND. | Appl Environ Microbiol | 10.1128/aem.55.9.2200-2205.1989 | 1989 | ||
| Metabolism | SdiA of Salmonella enterica is a LuxR homolog that detects mixed microbial communities. | Michael B, Smith JN, Swift S, Heffron F, Ahmer BM. | J Bacteriol | 10.1128/jb.183.19.5733-5742.2001 | 2001 | |
| Enzymology | Intergeneric transfer and recombination of the 6-phosphogluconate dehydrogenase gene (gnd) in enteric bacteria. | Nelson K, Selander RK. | Proc Natl Acad Sci U S A | 10.1073/pnas.91.21.10227 | 1994 | |
| Pathogenicity | Induction of the alkA gene of Escherichia coli in gram-negative bacteria. | Fernandez de Henestrosa AR, Barbe J. | J Bacteriol | 10.1128/jb.173.23.7736-7740.1991 | 1991 | |
| A stochastic killing system for biological containment of Escherichia coli. | Klemm P, Jensen LB, Molin S. | Appl Environ Microbiol | 10.1128/aem.61.2.481-486.1995 | 1995 | ||
| Metabolism | Klebsiella pneumoniae produces no histamine: Raoultella planticola and Raoultella ornithinolytica strains are histamine producers. | Kanki M, Yoda T, Tsukamoto T, Shibata T. | Appl Environ Microbiol | 10.1128/aem.68.7.3462-3466.2002 | 2002 | |
| Enzymology | Distribution of aldoxime dehydratase in microorganisms. | Kato Y, Ooi R, Asano Y. | Appl Environ Microbiol | 10.1128/aem.66.6.2290-2296.2000 | 2000 | |
| KpSC-ID: a multiplex real-time PCR assay for the simultaneous detection of the Klebsiella pneumoniae species complex and specific identification of Klebsiella pneumoniae, Klebsiella quasipneumoniae and Klebsiella variicola. | McAndrew G, Barbier E, Rodrigues C, Piveteau P, Brisse S, Reddington K. | Microbiology (Reading) | 10.1099/mic.0.001587 | 2025 | ||
| Enzymology | Ca(2+) in Hybridization Solutions for Fluorescence in situ Hybridization Facilitates the Detection of Enterobacteriaceae. | Haruta S, Iino T, Ohkuma M, Suzuki KI, Igarashi Y | Microbes Environ | 10.1264/jsme2.ME16186 | 2017 | |
| Metabolism | Isolation and lipid degradation profile of Raoultella planticola strain 232-2 capable of efficiently catabolizing edible oils under acidic conditions. | Sugimori D, Watanabe M, Utsue T | Appl Microbiol Biotechnol | 10.1007/s00253-012-3982-7 | 2012 | |
| Enzymology | Genetic and biochemical characterization of the chromosomal class A beta-lactamases of Raoultella (formerly Klebsiella) planticola and Raoultella ornithinolytica. | Walckenaer E, Poirel L, Leflon-Guibout V, Nordmann P, Nicolas-Chanoine MH | Antimicrob Agents Chemother | 10.1128/AAC.48.1.305-312.2004 | 2004 | |
| Metabolism | Formate and ethanol are the major products of glycerol fermentation produced by a Klebsiella planticola strain isolated from red deer. | Jarvis GN, Moore ER, Thiele JH | J Appl Microbiol | 10.1046/j.1365-2672.1997.00217.x | 1997 | |
| Fermentation of d-Xylose to Ethanol by Genetically Modified Klebsiella planticola. | Tolan JS, Finn RK | Appl Environ Microbiol | 10.1128/aem.53.9.2039-2044.1987 | 1987 |
| #1288 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3069 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #38087 | ; Curators of the CIP; |
| #46331 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15718 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68371 | Automatically annotated from API 50CH acid . |
| #121867 | Collection of Institut Pasteur ; Curators of the CIP; CIP 100751 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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