Providencia burhodogranariea (DSM 19968, ATCC BAA-1590, JCM 16940)

Name: Providencia burhodogranariea (DSM 19968, ATCC BAA-1590, JCM 16940)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5091

Type strain

Strain Designation B

Culture col. no. DSM 19968 ATCC BAA-1590 JCM 16940 B

NCBI tax ID(s) 1141662 516074

Special Collections DSMZ JCM Literature strains

Links

Providencia burhodogranariea B is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from haemolymph of wild-caught Drosophila melanogaster fruit flies.

Gram-negative rod-shaped aerobe mesophilic animal pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 407471

ATCC BAA-1590,JCM 16940,DSM 19968

@ref 20215

Last LPSN update 2025-12-16 09:47:59

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Morganellaceae

Genus Providencia

Species Providencia burhodogranariea

Full scientific name Providencia burhodogranariea Juneja and Lazzaro 2009

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
28876	negative	rod-shaped
125438	negative		99.735
125439	negative		97.9

Pigmentation

28876

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8413	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)		Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
8413	positive	growth	28	mesophilic
67770	positive	growth	28	mesophilic

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
28876	aerobe
125439	obligate aerobe	97.5

Spore formation

@ref	Spore formation	Confidence
125438		91.923
125439		99

Observation

28876

Observationaggregates in clumps

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
28876	16808 ChEBI	2-dehydro-D-gluconate	+	carbon source
28876	22599 ChEBI	arabinose	+	carbon source
28876	28757 ChEBI	fructose	+	carbon source
28876	17234 ChEBI	glucose	+	carbon source
28876	17754 ChEBI	glycerol	+	carbon source
28876	18403 ChEBI	L-arabitol	+	carbon source
28876	37684 ChEBI	mannose	+	carbon source
28876	506227 ChEBI	N-acetylglucosamine	+	carbon source
28876	15963 ChEBI	ribitol	+	carbon source
28876	33942 ChEBI	ribose	+	carbon source
28876	30911 ChEBI	sorbitol	+	carbon source
28876	27082 ChEBI	trehalose	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Arthropoda	#Insecta
#Host Body Product	#Fluids	-

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent
8413	haemolymph of wild-caught Drosophila melanogaster fruit flies	Drosophila melanogaster	Pennsylvania, State College, apple orchard	USA	USA	North America
67770	Drosophila melanogaster captured in an apple orchard	Drosophila melanogaster

Taxonmaps

69479

Global distribution of 16S sequence HM038004 (>99% sequence identity) for Providencia from Microbeatlas

Aquatic Samples	44
Soil Samples	23
Animal Samples	258
Plant Samples	48
Total Samples	373

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
8413		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM31485v2 assembly for Providencia burhodogranariea DSM 19968	scaffold	GCA_000314855	1141662.3	2529292851	1141662	67.62

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Providencia burhodogranariea ATCC:BAA-1590 16S ribosomal RNA gene, partial sequence	HM038004	1472	1141662
8413	Providencia burhodogranariea strain DSM 19968 16S ribosomal RNA gene, partial sequence	EU587101	978	1141662
124043	Providencia burhodogranariea DSM 19968 16S ribosomal RNA gene, partial sequence.	ON386153	887	1141662

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Providencia burhodogranariea DSM 19968
NCBI: GCA_000314855

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.00	no
125439	motility	BacteriaNetⓘ	no	50.20	no
125439	gram_stain	BacteriaNetⓘ	negative	97.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	97.50	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Providencia burhodogranariea DSM 19968
PATRIC: 1141662.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.74	yes
125438	anaerobic	anaerobicⓘ	no	94.40	yes
125438	spore-forming	spore-formingⓘ	no	91.92	no
125438	aerobic	aerobicⓘ	no	52.81	yes
125438	thermophilic	thermophileⓘ	no	99.50	yes
125438	flagellated	motile2+ⓘ	yes	76.97	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic revisitation and reclassification of the genus Providencia.	Dong X, Jia H, Yu Y, Xiang Y, Zhang Y.	mSphere	10.1128/msphere.00731-23	2024
	Decomposing virulence to understand bacterial clearance in persistent infections.	Hidalgo BA, Silva LM, Franz M, Regoes RR, Armitage SAO.	Nat Commun	10.1038/s41467-022-32118-1	2022
	Host Resistance to Bacterial Infection Varies Over Time, but Is Not Affected by a Previous Exposure to the Same Pathogen.	Acuna Hidalgo B, Armitage SAO.	Front Physiol	10.3389/fphys.2022.860875	2022
	Diversity, novelty, antimicrobial activity, and new antibiotics of cultivable endophytic actinobacteria isolated from psammophytes collected from Taklamakan Desert.	Wang T, Li F, Lu Q, Wu G, Jiang Z, Liu S, Habden X, Razumova EA, Osterman IA, Sergiev PV, Dontsova OA, Hu X, You X, Sun C.	J Pharm Anal	10.1016/j.jpha.2020.06.004	2021
Metabolism	Bacterial Methionine Metabolism Genes Influence Drosophila melanogaster Starvation Resistance.	Judd AM, Matthews MK, Hughes R, Veloz M, Sexton CE, Chaston JM.	Appl Environ Microbiol	10.1128/aem.00662-18	2018
Genetics	Genetic Influences of the Microbiota on the Life Span of Drosophila melanogaster.	Matthews MK, Wilcox H, Hughes R, Veloz M, Hammer A, Banks B, Walters A, Schneider KJ, Sexton CE, Chaston JM.	Appl Environ Microbiol	10.1128/aem.00305-20	2020
	The Glutaminase-Dependent Acid Resistance System: Qualitative and Quantitative Assays and Analysis of Its Distribution in Enteric Bacteria.	Pennacchietti E, D'Alonzo C, Freddi L, Occhialini A, De Biase D.	Front Microbiol	10.3389/fmicb.2018.02869	2018
	Comparative genomics of bacteria in the genus Providencia isolated from wild Drosophila melanogaster.	Galac MR, Lazzaro BP.	BMC Genomics	10.1186/1471-2164-13-612	2012
	Mobile insertion cassette elements found in small non-transmissible plasmids in Proteeae may explain qnrD mobilization.	Guillard T, Grillon A, de Champs C, Cartier C, Madoux J, Bercot B, Lebreil AL, Lozniewski A, Riahi J, Vernet-Garnier V, Cambau E.	PLoS One	10.1371/journal.pone.0087801	2014
	[Morphologic changes in cultures of different tissues exposed to the toxins of C1. perfringens types B, C, E and F].	Ermakova MP, Zemlianitskaia EP.	Zh Mikrobiol Epidemiol Immunobiol		1975
Genetics	Metagenome-wide association of microbial determinants of host phenotype in Drosophila melanogaster.	Chaston JM, Newell PD, Douglas AE.	mBio	10.1128/mbio.01631-14	2014
	Taxonomic and phenotypic characterization of a novel Providencia species: Providencia lanzhouensis sp. nov.	Xiang Y, Dong X, Ma L, Cao D, Li Y, Jiang X, Xu P, Yuan X, Bi K, Zhang Y, Han Y, Zhang Y.	Microbiol Spectr	10.1128/spectrum.00549-25	2025
	Novel Providencia xianensis sp. nov.: A multidrug-resistant species identified in clinical infections.	Dong X, Xiang Y, Yang P, Wang S, Yan W, Yuan Y, Zhou S, Zhou K, Liu J, Zhang Y.	Eur J Clin Microbiol Infect Dis	10.1007/s10096-024-04821-y	2024
Phylogeny	Providencia sneebia sp. nov. and Providencia burhodogranariea sp. nov., isolated from wild Drosophila melanogaster.	Juneja P, Lazzaro BP	Int J Syst Evol Microbiol	10.1099/ijs.0.000117-0	2009

References

#8413	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19968
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#28876	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25316 (see below)
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Providencia burhodogranariea (DSM 19968, ATCC BAA-1590, JCM 16940)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000314855

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

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