Providencia rustigianii 132-68 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from human faeces.
Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Morganellaceae |
| Genus Providencia |
| Species Providencia rustigianii |
| Full scientific name Providencia rustigianii Hickman-Brenner et al. 1983 |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 1722 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 34102 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 122320 | CIP Medium 3 | Medium recipe at CIP | |||
| 122320 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 95.1 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 122320 | 16947 ChEBI | citrate | + | carbon source | |
| 68371 | 17108 ChEBI | D-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68371 | 16899 ChEBI | D-mannitol | - | builds acid from | from API 50CH acid |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 122320 | 17234 ChEBI | glucose | + | fermentation | |
| 68371 | 17754 ChEBI | glycerol | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | - | builds acid from | from API 50CH acid |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API 50CH acid |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 122320 | 17716 ChEBI | lactose | - | fermentation | |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 122320 | 15792 ChEBI | malonate | - | assimilation | |
| 68371 | 17306 ChEBI | maltose | - | builds acid from | from API 50CH acid |
| 122320 | 29864 ChEBI | mannitol | - | fermentation | |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 122320 | 17632 ChEBI | nitrate | + | reduction | |
| 122320 | 16301 ChEBI | nitrite | - | reduction | |
| 68371 | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid | |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 122320 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68371 | 27082 ChEBI | trehalose | - | builds acid from | from API 50CH acid |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 122320 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 122320 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | - | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68382 | beta-galactosidase | - | 3.2.1.23 | from API zym |
| 122320 | beta-galactosidase | - | 3.2.1.23 | |
| 68382 | beta-glucosidase | - | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 122320 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 122320 | gelatinase | - | ||
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 122320 | lysine decarboxylase | - | 4.1.1.18 | |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 122320 | ornithine decarboxylase | - | 4.1.1.17 | |
| 122320 | oxidase | - | ||
| 122320 | phenylalanine ammonia-lyase | + | 4.3.1.24 | |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 122320 | tryptophan deaminase | + | ||
| 122320 | urease | - | 3.5.1.5 | |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 122320 | not determinedn.d. | + | - | - | - | + | - | - | - | - | + | + | + | + | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - |
| Cat1 | Cat2 | Cat3 | |
|---|---|---|---|
| #Host | #Human | - | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
Global distribution of 16S sequence DQ885264 (>99% sequence identity) for Providencia from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM4243182v1 assembly for Providencia rustigianii ATCC 33673 | contig | 158850 | 72.28 | ||||
| 66792 | 28869_H01 assembly for Providencia rustigianii NCTC11802 | contig | 158850 | 41.62 | ||||
| 67770 | ASM15639v1 assembly for Providencia rustigianii DSM 4541 | scaffold | 500637 | 30.32 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Providencia rustigianii 16S rRNA gene, type strain DSM 4541 | AM040489 | 1516 | 158850 | ||
| 20218 | Providencia rustigianii strain DSM 4541 16S ribosomal RNA gene, partial sequence | EU587030 | 978 | 158850 | ||
| 20218 | Providencia rustigianii strain NCTC 11802 16S ribosomal RNA gene, partial sequence | DQ885264 | 1476 | 158850 | ||
| 124043 | Providencia rustigianii strain DSM 4541 16S ribosomal RNA gene, partial sequence. | ON386151 | 881 | 158850 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | spore_formation | BacteriaNetⓘ | no | 95.10 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 64.90 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 98.80 | no |
| 125439 | oxygen_tolerance | BacteriaNetⓘ | obligate aerobe | 97.20 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 93.87 | yes |
| 125438 | spore-forming | spore-formingⓘ | no | 89.70 | no |
| 125438 | aerobic | aerobicⓘ | no | 67.13 | yes |
| 125438 | thermophilic | thermophileⓘ | no | 97.94 | yes |
| 125438 | flagellated | motile2+ⓘ | yes | 70.90 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Genomic revisitation and reclassification of the genus Providencia. | Dong X, Jia H, Yu Y, Xiang Y, Zhang Y. | mSphere | 10.1128/msphere.00731-23 | 2024 | |
| The gene expression and bioinformatic analysis of choline trimethylamine-lyase (CutC) and its activating enzyme (CutD) for gut microbes and comparison with their TMA production levels. | Ramireddy L, Tsen HY, Chiang YC, Hung CY, Chen FC, Yen HT. | Curr Res Microb Sci | 10.1016/j.crmicr.2021.100043 | 2021 | ||
| Immunoproteomic analysis of Clostridium botulinum type B secretome for identification of immunogenic proteins against botulism. | Sharma A, Ponmariappan S, Rani S, Alam SI, Shukla S. | Biotechnol Lett | 10.1007/s10529-021-03091-4 | 2021 | ||
| Phylogeny | Persistence of bacterial indicators and zoonotic pathogens in contaminated cattle wastes. | Blaiotta G, Di Cerbo A, Murru N, Coppola R, Aponte M. | BMC Microbiol | 10.1186/s12866-016-0705-8 | 2016 | |
| Genetics | Genome sequencing and annotation of Morganella sp. SA36. | Selim S, Hassan S, Hagagy N. | Genom Data | 10.1016/j.gdata.2015.08.016 | 2015 | |
| Draft Genome Sequence of a Diarrheagenic Morganella morganii Isolate. | Singh P, Mosci R, Rudrik JT, Manning SD. | Genome Announc | 10.1128/genomea.01165-15 | 2015 | ||
| Description of a 2,683-base-pair plasmid containing qnrD in two Providencia rettgeri isolates. | Guillard T, Cambau E, Neuwirth C, Nenninger T, Mbadi A, Brasme L, Vernet-Garnier V, Bajolet O, de Champs C. | Antimicrob Agents Chemother | 10.1128/aac.00081-11 | 2012 | ||
| Metabolism | Functional identification of Proteus mirabilis eptC gene encoding a core lipopolysaccharide phosphoethanolamine transferase. | Aquilini E, Merino S, Knirel YA, Regue M, Tomas JM. | Int J Mol Sci | 10.3390/ijms15046689 | 2014 | |
| Phylogeny | A 16S rRNA Gene and Draft Genome Database for the Murine Oral Bacterial Community. | Joseph S, Aduse-Opoku J, Hashim A, Hanski E, Streich R, Knowles SCL, Pedersen AB, Wade WG, Curtis MA. | mSystems | 10.1128/msystems.01222-20 | 2021 | |
| Comparative genomics of bacteria in the genus Providencia isolated from wild Drosophila melanogaster. | Galac MR, Lazzaro BP. | BMC Genomics | 10.1186/1471-2164-13-612 | 2012 | ||
| Metabolism | The Effectors and Sensory Sites of Formaldehyde-responsive Regulator FrmR and Metal-sensing Variant. | Osman D, Piergentili C, Chen J, Sayer LN, Uson I, Huggins TG, Robinson NJ, Pohl E. | J Biol Chem | 10.1074/jbc.m116.745174 | 2016 | |
| Enzymology | Expression and purification of the modification-dependent restriction enzyme BisI and its homologous enzymes. | Xu SY, Klein P, Degtyarev SKh, Roberts RJ. | Sci Rep | 10.1038/srep28579 | 2016 | |
| Genetics | Whole-genome sequencing and identification of Morganella morganii KT pathogenicity-related genes. | Chen YT, Peng HL, Shia WC, Hsu FR, Ken CF, Tsao YM, Chen CH, Liu CE, Hsieh MF, Chen HC, Tang CY, Ku TH. | BMC Genomics | 10.1186/1471-2164-13-s7-s4 | 2012 | |
| Top-down proteomic identification of furin-cleaved alpha-subunit of Shiga toxin 2 from Escherichia coli O157:H7 using MALDI-TOF-TOF-MS/MS. | Fagerquist CK, Sultan O. | J Biomed Biotechnol | 10.1155/2010/123460 | 2010 | ||
| Enzymology | Isolation of Providencia heimbachae from human feces. | Mohr O'Hara C, Steigerwalt AG, Green D, McDowell M, Hill BC, Brenner DJ, Miller JM. | J Clin Microbiol | 10.1128/jcm.37.9.3048-3050.1999 | 1999 | |
| Enzymology | BactQuant: an enhanced broad-coverage bacterial quantitative real-time PCR assay. | Liu CM, Aziz M, Kachur S, Hsueh PR, Huang YT, Keim P, Price LB. | BMC Microbiol | 10.1186/1471-2180-12-56 | 2012 | |
| Enzymology | Use of tuf sequences for genus-specific PCR detection and phylogenetic analysis of 28 streptococcal species. | Picard FJ, Ke D, Boudreau DK, Boissinot M, Huletsky A, Richard D, Ouellette M, Roy PH, Bergeron MG. | J Clin Microbiol | 10.1128/jcm.42.8.3686-3695.2004 | 2004 | |
| Enzymology | Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples. | Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG. | Appl Environ Microbiol | 10.1128/aem.02337-10 | 2011 | |
| Development of a PCR assay for rapid detection of enterococci. | Ke D, Picard FJ, Martineau F, Menard C, Roy PH, Ouellette M, Bergeron MG. | J Clin Microbiol | 10.1128/jcm.37.11.3497-3503.1999 | 1999 | ||
| Enzymology | Phosphatase activity is a constant feature of all isolates of all major species of the family Enterobacteriaceae. | Satta G, Pompei R, Grazi G, Cornaglia G. | J Clin Microbiol | 10.1128/jcm.26.12.2637-2641.1988 | 1988 | |
| Phylogeny | Molecular characterization of the genera Proteus, Morganella, and Providencia by ribotyping. | Pignato S, Giammanco GM, Grimont F, Grimont PA, Giammanco G. | J Clin Microbiol | 10.1128/jcm.37.9.2840-2847.1999 | 1999 | |
| Mobile insertion cassette elements found in small non-transmissible plasmids in Proteeae may explain qnrD mobilization. | Guillard T, Grillon A, de Champs C, Cartier C, Madoux J, Bercot B, Lebreil AL, Lozniewski A, Riahi J, Vernet-Garnier V, Cambau E. | PLoS One | 10.1371/journal.pone.0087801 | 2014 | ||
| Molecular Identification and Selection of Probiotic Strains Able to Reduce the Serum TMAO Level in Mice Challenged with Choline. | Ramireddy L, Tsen HY, Chiang YC, Hung CY, Wu SR, Young SL, Lin JS, Huang CH, Chiu SH, Chen CC, Chen CC. | Foods | 10.3390/foods10122931 | 2021 | ||
| Phylogeny | Providencia rustigianii: a new species in the family Enterobacteriaceae formerly known as Providencia alcalifaciens biogroup 3. | Hickman-Brenner FW, Farmer JJ 3rd, Steigerwalt AG, Brenner DJ | J Clin Microbiol | 10.1128/jcm.17.6.1057-1060.1983 | 1983 | |
| Taxonomic and phenotypic characterization of a novel Providencia species: Providencia lanzhouensis sp. nov. | Xiang Y, Dong X, Ma L, Cao D, Li Y, Jiang X, Xu P, Yuan X, Bi K, Zhang Y, Han Y, Zhang Y. | Microbiol Spectr | 10.1128/spectrum.00549-25 | 2025 | ||
| Novel Providencia xianensis sp. nov.: A multidrug-resistant species identified in clinical infections. | Dong X, Xiang Y, Yang P, Wang S, Yan W, Yuan Y, Zhou S, Zhou K, Liu J, Zhang Y. | Eur J Clin Microbiol Infect Dis | 10.1007/s10096-024-04821-y | 2024 | ||
| Phylogeny | Providencia sneebia sp. nov. and Providencia burhodogranariea sp. nov., isolated from wild Drosophila melanogaster. | Juneja P, Lazzaro BP. | Int J Syst Evol Microbiol | 10.1099/ijs.0.000117-0 | 2009 |
| #1722 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4541 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #34102 | ; Curators of the CIP; |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #122320 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103032 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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