Name: Plesiomonas shigelloides M51
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5055

Type strain:

Species: Plesiomonas shigelloides

Strain Designation: M51, Bader M51

Culture col. no.: DSM 8224, ATCC 14029, NCIB 9242, RH 798, CCUG 410, NCTC 10360, NCIMB 9242, CDC 3085-55, CIP 63.5, LMG 4242

Strain history: CIP <- 1963, NCIB <- 1961, W.H. Ewing: strain Bader M51

NCBI tax ID(s): 1354269 (strain), 703 (species)

SI-ID 3853

LMG 4242, ATCC 14029, CCUG 2025, CCUG 410, LMG 4439, NCIB 9242, NCTC 10360, NCIMB 9242, CIP 63.5, CECT 4262, CCRC 14727, NCCB 80007, LMD 80.7, BCRC 14727, CNCTC 6299, CGMCC 1.1998, DSM 8224

Special Collections

Other strains from Plesiomonas shigelloides

Section

When using BacDive for research please cite our paper

Plesiomonas shigelloides M51 is an aerobe, mesophilic, Gram-negative human pathogen that produces toxins and was isolated from dog faeces.

toxin production
Gram-negative
motile
rod-shaped
aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Plesiomonas*
	Species	**Plesiomonas shigelloides**
	Full Scientific Name (LPSN)	Plesiomonas shigelloides corrig. (Bader 1954) Habs and Schubert 1962 (Approved Lists 1980)

	Synonym	Pleisomonas shigelloides
	Synonym	"Pseudomonas* shigelloides"*

Information on morphological and physiological properties Morphology

[Ref.: #122586]	Gram stain	negative
[Ref.: #125439]	Gram stain	negative Confidence in %98.1
[Ref.: #125438]	Gram stain	negative Confidence in %99

[Ref.: #122586]	Cell shape	rod-shaped

[Ref.: #122586]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #3211]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #3211]

Culture medium growth

[Ref.: #3211]

Culture medium link

Medium recipe at MediaDive

[Ref.: #3211]

Culture medium composition

expand / minimize

[Ref.: #35009]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #35009]

Culture medium growth

[Ref.: #35009]

Culture medium composition

expand / minimize

[Ref.: #122586]

Culture medium

CIP Medium 72

[Ref.: #122586]

Culture medium growth

[Ref.: #122586]

Culture medium link

Medium recipe provided by DSMZ

	Kind of temperature		Temperature
[Ref.: #3211]		growth	28 °C
[Ref.: #35009]		growth	30 °C
[Ref.: #44190]		growth	37 °C
[Ref.: #122586]		growth	30-41 °C
[Ref.: #122586]	negative	growth	5 °C
[Ref.: #122586]	negative	growth	10 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #44190]	Oxygen tolerance	aerobe
[Ref.: #122586]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %91.8

[Ref.: #122586]	Ability of spore formation	no
[Ref.: #125439]	Ability of spore formation	no Confidence in %98.3
[Ref.: #125438]	Ability of spore formation	no Confidence in %92.86

[Ref.: #3211]

Name of produced compound

tetrodotoxin

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #122586]	citrate ChEBI	-	carbon source
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #122586]	glucose ChEBI	+	fermentation
[Ref.: #122586]	glucose ChEBI	+	degradation
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #122586]	lactose ChEBI	-	fermentation
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #122586]	malonate ChEBI	-	assimilation
[Ref.: #122586]	mannitol ChEBI	+	fermentation
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #122586]	nitrate ChEBI	+	reduction
[Ref.: #122586]	nitrite ChEBI	-	reduction
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #122586]	sodium thiosulfate ChEBI	-	builds gas from
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #122586]	indole ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	yes	* from API 20E

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #122586]	acetoin ChEBI	-
[Ref.: #122586]	glucose ChEBI		+
[Ref.: #68368]	acetoin ChEBI	+			* from API 20E
[Ref.: #68368]	indole ChEBI			+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122586]	alcohol dehydrogenase	+	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #122586]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	-	3.2.1.23	* from API zym, API 20E
[Ref.: #68382]	beta-glucosidase	-	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122586]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	-	3.4.11.3	* from API zym
[Ref.: #68368]	cytochrome oxidase	+	1.9.3.1	* from API 20E
[Ref.: #68382]	esterase (C 4)	-		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122586]	gelatinase	-
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #122586]	lysine decarboxylase	+	4.1.1.18
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122586]	ornithine decarboxylase	+	4.1.1.17
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #122586]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #122586]	tryptophan deaminase	-
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #122586]	urease	-	3.5.1.5
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E
[Ref.: #68382]	valine arylamidase	-		* from API zym
	Only first 10 entries are displayed. Click here to see all.

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #44190]

Fatty acid	Percentage	ECL
C16:0	30.3	16
C17:0 CYCLO	17.9	16.888
C16:1 ω7c	15.7	15.819
C18:1 ω7c /12t/9t	9.7	17.824
C11:0 ISO 3OH	5	12.09
C14:0 3OH/C16:1 ISO I	4.1	15.485
C14:0	3.6	14
C12:1 3OH	3.6	13.289
C18:1 ω9c	2	17.769
C16:1 ω9c	1.6	15.774
C18:0	1.4	18
C18:1 2OH	1.3	19.088
C19:0 CYCLO ω8c	0.9	18.9
C13:0 ISO 2OH	0.8	13.814
C16:0 3OH	0.6	17.52
unknown 12.486	0.6	12.486
C19:0 ISO	0.4	18.633
C18:1 ω5c	0.3	17.919

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #3211]	19597	-	+	+	+	-	-	-	-	+	+	-	+	-	+	-	-	-	-	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122586]	13045	-	+	-	+	-	+	-	-	-	-	+	+	-	-	-	+	-	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #3211]	Sample type/isolated from	dog faeces
[Ref.: #3211]	Country	Germany
[Ref.: #3211]	Country ISO 3 Code	DEU
[Ref.: #3211]	Continent	Europe

[Ref.: #44190]	Sample type/isolated from	Dog ?
[Ref.: #44190]	Sampling date	1955

[Ref.: #122586]	Sample type/isolated from	Animal, Dog, feces
[Ref.: #122586]	Country	Germany
[Ref.: #122586]	Country ISO 3 Code	DEU
[Ref.: #122586]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Mammals	#Canidae (Dog)
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence X74688 (>99% sequence identity) for Plesiomonas shigelloides subclade from Microbeatlas

Aquatic Samples	1680
Soil Samples	630
Animal Samples	7865
Plant Samples	892
Total Samples	11067

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #3211]	Pathogenicity (human)	yes
[Ref.: #3211]	Pathogenicity (animal)	yes
[Ref.: #3211]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #122586]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #3211]	Plesiomonas shigelloides 16S rRNA gene, strain NCIMB9242	X60418	1499	GenBank ENA	703 tax ID
[Ref.: #20218]	Plesiomonas shigelloides 16S rRNA	D11185	211	GenBank ENA	703 tax ID	*
[Ref.: #20218]	Plesiomonas shigelloides 16S rRNA	D11234	213	GenBank ENA	703 tax ID	*
[Ref.: #20218]	Plesiomonas shigelloides 16S rRNA	D11283	200	GenBank ENA	703 tax ID	*
[Ref.: #20218]	Plesiomonas shigelloides 16S ribosomal RNA	M59159	1489	GenBank ENA	703 tax ID	*
[Ref.: #20218]	P.shigelloides (ATCC 14029T) gene for 16S ribosomal RNA	X74688	1457	GenBank ENA	703 tax ID	*
[Ref.: #20218]	Plesiomonas shigelloides strain DSM 8224 16S ribosomal RNA gene, partial sequence	HM007572	1348	GenBank ENA	703 tax ID	*
[Ref.: #20218]	P.shigelloides genes for 16S rRNA (partial) tRNA-Glu, and 16S rRNA (parital)	X65486	480	GenBank ENA	703 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Plesiomonas shigelloides NCTC10360	GCA_900087055	complete	GenBank ENA	703 tax ID	*
[Ref.: #66792]	Plesiomonas shigelloides strain NCTC10360	703.8	complete	PATRIC	703 tax ID	*
[Ref.: #66792]	Plesiomonas shigelloides NCTC 10360	2773857999	complete	JGI IMG/M	703 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Plesiomonas shigelloides NCTC10360 NCBI: GCA_900087055.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	93.746	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	70.641	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	92.86	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98.5	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	87.742	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Plesiomonas shigelloides strain NCTC10360 PATRIC: 703.8
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	98.3
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	86.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	98.1
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	91.8

Availability in culture collections External links

[Ref.: #3211]

Culture collection no.

DSM 8224, ATCC 14029, NCIB 9242, RH 798, CCUG 410, NCTC 10360, NCIMB 9242, CDC 3085-55, CIP 63.5, LMG 4242

[Ref.: #74550]

SI-ID 3853

Literature:

	Title	Authors	Journal	DOI	Year
Genetics	Pathogenomics of Virulence Traits of Plesiomonas shigelloides That Were Deemed Inconclusive by Traditional Experimental Approaches.	Ekundayo TC, Okoh AI	Front Microbiol	10.3389/fmicb.2018.03077	2018	*
Genetics	Complete Genome Sequence of Plesiomonas shigelloides Type Strain NCTC10360.	Alexander S, Fazal MA, Burnett E, Deheer-Graham A, Oliver K, Holroyd N, Parkhill J, Russell JE	Genome Announc	10.1128/genomeA.01031-16	2016	*
Enzymology	Chemical characterization of enterobacterial common antigen isolated from Plesiomonas shigelloides ATCC 14029.	Basu S, Kuhn HM, Neszmelyi A, Himmelspach K, Mayer H	Eur J Biochem	10.1111/j.1432-1033.1987.tb10544.x	1987	*
	Ciprofloxacin-Tethered 1,2,3-Triazole Conjugates: New Quinolone Family Compounds to Upgrade Our Antiquated Approach against Bacterial Infections.	Agarwal A, Singh P, Maurya A, Patel UK, Singh A, Nath G	ACS Omega	10.1021/acsomega.1c05303	2022	*
	Inclusion bodies in Plesiomonas shigelloides.	Pastian MR, Bromel MC	Appl Environ Microbiol	10.1128/aem.47.1.216-218.1984	1984	*

References

#3211

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 8224

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35009 ; Curators of the CIP;
#44190 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 410

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#74550

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID3853.1 )

#122586 Collection of Institut Pasteur ; Curators of the CIP; CIP 63.5

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Plesiomonas shigelloides NCTC10360

Plesiomonas shigelloides strain NCTC10360

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