Name: Photorhabdus temperata XlNach
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5034

Type strain:

Species: Photorhabdus temperata

Strain Designation: XlNach

Culture col. no.: DSM 14550, CCM 7078, CIP 105563

Strain history: <- CIP <- N. Boemare, Univ. Montpellier; XlNach <- R. J. Akhurst <- Spiridonov

NCBI tax ID(s): 574560 (species)

Other strains from Photorhabdus temperata

P. temperata HSH2, Sel.bc, DSM 12190

Section

Photorhabdus temperata XlNach is a mesophilic animal pathogen that was isolated from nematode Heterorhabditis megidis.

animal pathogen
mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Morganellaceae*
	Genus	*Photorhabdus*
	Species	**Photorhabdus temperata**
	Full Scientific Name (PNU)	Photorhabdus temperata Fischer-Le Saux et al. 1999

Information on culture and growth conditions Culture and growth conditions

[Ref.: #5383]

Culture medium

COLUMBIA AGAR (DSMZ Medium 715)

[Ref.: #5383]

Culture medium growth

[Ref.: #5383]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #5383]

Culture medium composition

expand / minimize

[Ref.: #5383]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #5383]

Culture medium growth

[Ref.: #5383]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #5383]

Culture medium composition

expand / minimize

[Ref.: #38563]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #38563]

Culture medium growth

[Ref.: #38563]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #5383]			growth	30 °C
[Ref.: #38563]			growth	30 °C

[Ref.: #5383]	Temperature range	mesophilic
[Ref.: #38563]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #5383]	Sample type/isolated from	nematode Heterorhabditis megidis
[Ref.: #5383]	Host species	Heterorhabditis megidis
[Ref.: #5383]	Geographic location (country and/or sea, region)	Nachodka
[Ref.: #5383]	Country	Russia
[Ref.: #5383]	Country ISO 3 Code	RUS
* marker position based on {}

Isolation sources categories

#Host

#Invertebrates (Other)

#Nematoda

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AJ007405 (>99% sequence identity) for Photorhabdus temperata subclade from Microbeatlas

Aquatic Samples	2
Soil Samples	5
Animal Samples	26
Plant Samples
Total Samples	33

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #5383]	Pathogenicity (animal)	yes
[Ref.: #5383]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #5383]	Photorhabdus temperata partial 16S rRNA gene, strain XINach	AJ007405	1526	ENA	574560 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Photorhabdus temperata DSM 14550	GCA_025384845	contig	GenBank	574560 tax ID	*
[Ref.: #66792]	uncultured Clostridia bacterium SRR14812370_bin.19_metaWRAP_v1.3_MAG	GCA_946407575	contig	PATRIC	244328 tax ID	*

Availability in culture collections External links

[Ref.: #5383]

Culture collection no.

DSM 14550, CCM 7078, CIP 105563

[Ref.: #20218]

Associated Passport(s) in StrainInfo

303435, 340495, 153864

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polyphasic classification of the genus Photorhabdus and proposal of new taxa: P. luminescens subsp. luminescens subsp. nov., P. luminescens subsp. akhurstii subsp. nov., P. luminescens subsp. laumondii subsp. nov., P. temperata sp. nov., P. temperata subsp. temperata subsp. nov. and P. asymbiotica sp. nov.	Fischer-Le Saux M, Viallard V, Brunel B, Normand P, Boemare NE	Int J Syst Bacteriol	10.1099/00207713-49-4-1645	1999	*
Genetics	Structure of the O-polysaccharide of Photorhabdus temperata subsp. temperata XlNach(T) containing a novel branched monosaccharide, 3,6-dideoxy-4-C-[(S)-1,2-dihydroxyethyl]-d-xylo-hexose.	Arbatsky NP, Shashkov AS, Kirsheva NA, Kondakova AN, Shaikhutdinova RZ, Ivanov SA, Anisimov AP, Knirel YA	Carbohydr Res	10.1016/j.carres.2014.02.020	2014	*

References

#5383

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 14550

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#38563 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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