Pectobacterium atrosepticum (DSM 18077, ATCC 33260, CFBP 1526)

Name: Pectobacterium atrosepticum (DSM 18077, ATCC 33260, CFBP 1526)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5018

Type strain

Strain Designation G/39, G39

Culture col. no. DSM 18077 ATCC 33260 CFBP 1526 CIP 105192 NCPPB 549 4 more

NCBI tax ID(s) 29471

Special Collections DSMZ CIP

History DSMZ <- CFBP <- D. C. Graham; G/39 CIP <- 1997, CFBP <- D.C. Graham: strain G39

Links

Pectobacterium atrosepticum G/39 is a facultative anaerobe, Gram-negative, motile plant pathogen that was isolated from Solanum tuberosum.

Gram-negative motile rod-shaped facultative anaerobe plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 2463

LMG 2386,ATCC 33260,CECT 314,ICMP 1526,NCPPB 549,PDDCC 1526,CIP 105192,CFBP 1526,CCRC 13196,BCRC 13196,KACC 10477,DSM 18077

@ref 20215

Last LPSN update 2026-05-29 08:26:04

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Pectobacteriaceae

Genus Pectobacterium

Species Pectobacterium atrosepticum

Full scientific name Pectobacterium atrosepticum (van Hall 1902) Gardan et al. 2003

Synonyms (3)

Pectobacterium carotovorum subsp. atrosepticum
"Bacillus atrosepticus"
Erwinia carotovora subsp. atroseptica

BacDive ID	Other strains from **Pectobacterium atrosepticum** (4)	Type strain
5019	P. atrosepticum 33-4/1, DSM 30184, DSM 60108
5020	P. atrosepticum 34-1/1, DSM 30185
5021	P. atrosepticum 33-1/1, DSM 30186, DSM 60336
130948	P. atrosepticum M37, DSM 23895

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
116545	negative	rod-shaped
125438	negative		99
125439	negative		92.727

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
7378	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
38538	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
116545	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
7378	positive	growth	30
38538	positive	growth	30
116545	positive	growth	5-30
116545	negative	growth	37
116545	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
116545	facultative anaerobe
125439	obligate aerobe	95.165

Spore formation

@ref	Spore formation	Confidence
125439		93.18

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
116545	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
116545	17234 ChEBI	glucose	+	fermentation
116545	17234 ChEBI	glucose	+	degradation
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
116545	17716 ChEBI	lactose	+	fermentation
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	-	degradation	from API 20E
116545	15792 ChEBI	malonate	-	assimilation
68371	17306 ChEBI	maltose	-	builds acid from	from API 50CH acid
116545	29864 ChEBI	mannitol	+	fermentation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	+	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
116545	17632 ChEBI	nitrate	+	reduction
68368	17632 ChEBI	nitrate	-	reduction	from API 20E
116545	16301 ChEBI	nitrite	-	reduction
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371	0 ChEBI	Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
116545	132112 ChEBI	sodium thiosulfate	-	builds gas from
68368	30911 ChEBI	sorbitol	-	fermentation	from API 20E
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
116545	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	17997 ChEBI	dinitrogen	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
116545	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
116545	15688 ChEBI	acetoin	+
68368	15688 ChEBI	acetoin	+			from API 20E
116545	17234 ChEBI	glucose		+
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
116545	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
116545	beta-galactosidase	+	3.2.1.23
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
116545	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
116545	gelatinase	-
68368	gelatinase	-		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
116545	lysine decarboxylase	-	4.1.1.18
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116545	ornithine decarboxylase	-	4.1.1.17
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
116545	oxidase	-
116545	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
116545	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
116545	urease	-	3.5.1.5
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	-		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
7378	+	-	-	-	+	-	-	-	-	+	-	+	+	+	-	+	+	+	+	+	-	-	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116545	-	+	-	+	-	+	-	-	+	-	+	+	+	+	-	+	+	-	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
116545	not determinedn.d.	+/-	-	-	+	+	+	-	-	-	+	+	+	+	-	+	-	+/-	+	-	-	+	+	+/-	+	+	+	+	-	+	+	+	+/-	-	-	+	-	-	-	+	-	-	-	-	-	-	-	+	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
116545	not determinedn.d.	+	+	+	+	+	-	+	+	+	-	-	+	+	+	+	+	+	+	+	+	+	+	+	+	-	-	-	-	-	-	-	+	+	+	-	-	-	-	-	-	-	+	-	+	+	-	-	-	-	+	-	-	-	+	+	+	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	-	-	+	-	-	+	-	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
7378	Solanum tuberosum	Solanum tuberosum	United Kingdom	GBR	Europe
116545	Solanum tuberosum	Solanum tuberosum	United Kingdom	GBR	Europe

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
7378		1	Risk group (German classification) According to TRBA 466
116545		1	Risk group (French classification) According to TRBA 466

Phages

@ref	Name	Strain number
124042	Pectobacterium phage vB_PatP_CB1	DSM 18077

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM1905659v1 assembly for Pectobacterium atrosepticum CFBP1526	complete	GCA_019056595	29471.84		29471	74.02
66792	ASM74990v1 assembly for Pectobacterium atrosepticum NCPPB 549	contig	GCA_000749905	29471.26	2740892408	29471	67.62

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Pectobacterium carotovorum subsp. carotovorum strain ATCC 33260 16S ribosomal RNA gene, partial sequence	FJ595869	874	555
20218	Pectobacterium atrosepticum strain CFBP 1526 16S ribosomal RNA gene, partial sequence	JN600332	1531	29471
7378	Pectobacterium atrosepticum 16S ribosomal RNA, strain LMG 2386	Z96090	1485	29471
124043	Pectobacterium carotovorum subsp. atrosepticum strain LMG 2386 16S-23S intergenic spacer region and tRNA-Glu gene, complete sequence.	AF232687	446	29471
124043	Pectobacterium atrosepticum strain CFBP 1526 16S ribosomal RNA gene, partial sequence.	MH424609	461	29471

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1905659v1 assembly for Pectobacterium atrosepticum CFBP1526
BV-BRC: 29471.84

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	95.17	no
125439	gram_stain	BacteriaNetⓘ	negative	92.73	no
125439	motility	BacteriaNetⓘ	yes	77.95	no
125439	spore_formation	BacteriaNetⓘ	no	93.18	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pectobacterium atrosepticum CFBP1526
NCBI: GCA_019056595.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	94.93	no
125438	aerobic	aerobicⓘ	no	75.55	yes
125438	spore-forming	spore-formingⓘ	no	89.05	no
125438	thermophilic	thermophileⓘ	no	98.58	yes
125438	flagellated	motile2+ⓘ	yes	79.20	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Highly Targeted Detection of Priority Phytopathogen Pectobacterium brasiliense: From Obtaining Polyclonal Antibodies to Development and Approbation of Enzyme-Linked Immunoassay and Lateral Flow Immunoassay.	Safenkova IV, Galushka PA, Varitsev YA, Kamionskaya MV, Drenova NV, Vasilyeva AA, Zherdev AV, Uskov AI, Dzantiev BB.	Microorganisms	10.3390/microorganisms12122436	2024
Phylogeny	Novel N4-Like Bacteriophages of Pectobacterium atrosepticum.	Buttimer C, Hendrix H, Lucid A, Neve H, Noben JP, Franz C, O'Mahony J, Lavigne R, Coffey A.	Pharmaceuticals (Basel)	10.3390/ph11020045	2018
	Isolation and Characterization of Pectobacterium Phage vB_PatM_CB7: New Insights into the Genus Certrevirus.	Buttimer C, Lynch C, Hendrix H, Neve H, Noben JP, Lavigne R, Coffey A.	Antibiotics (Basel)	10.3390/antibiotics9060352	2020
Phylogeny	Pectobacterium atrosepticum Phage vB_PatP_CB5: A Member of the Proposed Genus 'Phimunavirus'.	Buttimer C, Lucid A, Neve H, Franz CMAP, O'Mahony J, Turner D, Lavigne R, Coffey A.	Viruses	10.3390/v10080394	2018
Genetics	Things Are Getting Hairy: Enterobacteria Bacteriophage vB_PcaM_CBB.	Buttimer C, Hendrix H, Oliveira H, Casey A, Neve H, McAuliffe O, Ross RP, Hill C, Noben JP, O'Mahony J, Lavigne R, Coffey A.	Front Microbiol	10.3389/fmicb.2017.00044	2017
	A Hundred Years of Bacteriophages: Can Phages Replace Antibiotics in Agriculture and Aquaculture?	Sieiro C, Areal-Hermida L, Pichardo-Gallardo A, Almuina-Gonzalez R, de Miguel T, Sanchez S, Sanchez-Perez A, Villa TG.	Antibiotics (Basel)	10.3390/antibiotics9080493	2020
	Pectobacterium Phage Jarilo Displays Broad Host Range and Represents a Novel Genus of Bacteriophages Within the Family Autographiviridae.	Pedersen JS, Carstens AB, Djurhuus AM, Kot W, Neve H, Hansen LH.	Phage (New Rochelle)	10.1089/phage.2020.0037	2020
Phylogeny	Species of Dickeya and Pectobacterium Isolated during an Outbreak of Blackleg and Soft Rot of Potato in Northeastern and North Central United States.	Curland RD, Mainello A, Perry KL, Hao J, Charkowski AO, Bull CT, McNally RR, Johnson SB, Rosenzweig N, Secor GA, Larkin RP, Gugino BK, Ishimaru CA.	Microorganisms	10.3390/microorganisms9081733	2021
	Identification of new Dickeya dadantii virulence factors secreted by the type 2 secretion system.	Condemine G, Le Derout B.	PLoS One	10.1371/journal.pone.0265075	2022
	Draft Genome Sequences of Three Pectobacterium Strains Causing Blackleg of Potato: P. carotovorum subsp. brasiliensis ICMP 19477, P. atrosepticum ICMP 1526, and P. carotovorum subsp. carotovorum UGC32.	Panda P, Fiers MW, Lu A, Armstrong KF, Pitman AR.	Genome Announc	10.1128/genomea.00874-15	2015
	Bioactivity of essential oils extracted from Cupressus macrocarpa branchlets and Corymbia citriodora leaves grown in Egypt.	Salem MZM, Elansary HO, Ali HM, El-Settawy AA, Elshikh MS, Abdel-Salam EM, Skalicka-Wozniak K.	BMC Complement Altern Med	10.1186/s12906-018-2085-0	2018
Phylogeny	Phylogeny and virulence of naturally occurring type III secretion system-deficient Pectobacterium strains.	Kim HS, Ma B, Perna NT, Charkowski AO.	Appl Environ Microbiol	10.1128/aem.01336-08	2009
	The First Polish Isolate of a Novel Species Pectobacterium aquaticum Originates from a Pomeranian Lake.	Babinska W, Motyka-Pomagruk A, Sledz W, Kowalczyk A, Kaczynski Z, Lojkowska E.	Int J Environ Res Public Health	10.3390/ijerph18095041	2021
	Single and dual RPA-CRISPR/Cas assays for point-of-need detection of Stewart's wilt pathogen (Pantoea stewartii subsp. stewartii) of corn and Maize dwarf mosaic virus.	Tian Q, Zhou H, Zhao Z, Zhang Y, Zhao W, Cai L, Guo T.	Pest Manag Sci	10.1002/ps.8597	2025
	Soft rot pathogen Dickeya dadantii 3937 produces tailocins resembling the tails of Peduovirus P2.	Borowicz M, Krzyzanowska DM, Narajczyk M, Sobolewska M, Rajewska M, Czaplewska P, Wegrzyn K, Czajkowski R.	Front Microbiol	10.3389/fmicb.2023.1307349	2023
	Development of qPCR Detection Assay for Potato Pathogen Pectobacterium atrosepticum Based on a Unique Target Sequence.	Lukianova AA, Evseev PV, Stakheev AA, Kotova IB, Zavriev SK, Ignatov AN, Miroshnikov KA.	Plants (Basel)	10.3390/plants10020355	2021
Phylogeny	Development of a Sensitive and Specific Polyclonal Antibody for Serological Detection of Clavibacter michiganensis subsp. sepedonicus.	Przewodowski W, Przewodowska A.	PLoS One	10.1371/journal.pone.0169785	2017
	Simultaneous detection of major blackleg and soft rot bacterial pathogens in potato by multiplex polymerase chain reaction.	Potrykus M, Sledz W, Golanowska M, Slawiak M, Binek A, Motyka A, Zoledowska S, Czajkowski R, Lojkowska E.	Ann Appl Biol	10.1111/aab.12156	2014
Metabolism	Ferredoxin containing bacteriocins suggest a novel mechanism of iron uptake in Pectobacterium spp.	Grinter R, Milner J, Walker D.	PLoS One	10.1371/journal.pone.0033033	2012
	Structure of the atypical bacteriocin pectocin M2 implies a novel mechanism of protein uptake.	Grinter R, Josts I, Zeth K, Roszak AW, McCaughey LC, Cogdell RJ, Milner JJ, Kelly SM, Byron O, Walker D.	Mol Microbiol	10.1111/mmi.12655	2014
	Structure of the bacterial plant-ferredoxin receptor FusA.	Grinter R, Josts I, Mosbahi K, Roszak AW, Cogdell RJ, Bonvin AM, Milner JJ, Kelly SM, Byron O, Smith BO, Walker D.	Nat Commun	10.1038/ncomms13308	2016
Phylogeny	Identification of Xanthomonas fragariae, Xanthomonas axonopodis pv. phaseoli, and Xanthomonas fuscans subsp. fuscans with novel markers and using a dot blot platform coupled with automatic data analysis.	Albuquerque P, Caridade CM, Marcal AR, Cruz J, Cruz L, Santos CL, Mendes MV, Tavares F.	Appl Environ Microbiol	10.1128/aem.05189-11	2011
	First Report of Potato Blackleg Disease Caused by Pectobacterium atrosepticum in Guangdong China.	She XM, He ZF, Tang YF, Du ZG, Lan GB	Plant Dis	10.1094/PDIS-03-13-0275-PDN	2013
Phylogeny	Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov.	Gardan L, Gouy C, Christen R, Samson R	Int J Syst Evol Microbiol	10.1099/ijs.0.02423-0	2003

References

#7378	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18077
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#38538	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#116545	Collection of Institut Pasteur ; Curators of the CIP; CIP 105192
#124042	Johannes Wittmann, Clara Rolland, Lorenz Reimer, Joaquim Sardà: PhageDive .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pectobacterium atrosepticum (DSM 18077, ATCC 33260, CFBP 1526)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Antibiotic resistance

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Metabolite tests

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API 20E

API zym

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API biotype100

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